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Table 2 Parameter estimates, log-likelihood scores, and AIC weights obtained from Clade model analyses of the RH2a data set

From: Complex patterns of divergence among green-sensitive (RH2a) African cichlid opsins revealed by Clade model analyses

Model (n.p.)

SC 0

SC 1

SC 2

κ

lnL

Δ AIC

AIC weight

 

ω0

p 0

ω1

p 1

ω2, ω3, ω4

p 2

    

CmC αβMVR & βT (39)

0.0142

0.7890

1

0.0000

ω2: 0.4988

0.2110

1.7071

−3789.9781

—

0.6394

     

ω3: 1.0919

     
     

ω4: 2.6122

     

CmC αβ (38)

0.0151

0.7925

1

0.0000

ω2: 0.5062

0.2075

1.7089

−3776.0852

2.19

0.2143

     

ω3: 1.3889

     

CmC α & β (39)

0.0147

0.7911

1

0.0000

ω2: 0.5037

0.2089

1.7085

−3775.7671

3.55

0.1084

     

ω3: 1.1308

     
     

ω4: 1.5420

     

CmC β (38)

0.0127

0.7838

1

0.0000

ω2: 0.5471

0.2163

1.7033

−3778.3671

6.75

0.0219

     

ω3: 1.5315

     

CmC βT (38)

0.0115

0.7789

1

0.0000

ω2: 0.5882

0.2211

1.6971

−3778.6874

7.39

0.0159

     

ω3: 2.5296

     

CmC α (38)

0.0138

0.7882

1

0.0000

ω2: 0.6458

0.2119

1.6993

−3784.5357

19.09

0.0000

     

ω3: 1.1498

     

M2a_rel (37)

0.0089

0.7639

1

0.0512

ω2: 0.5401

0.1849

1.6956

−3785.9512

19.92

0.0000

M1a (35)

0.0235

0.8241

1

0.1759

-

-

1.7669

−3789.9781

23.97

0.0000

  1. NOTE—n.p. = number of parameters; SC = site class.
  2. Models are ranked according to AIC score.