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Table 1 Symbiodinium community characterizations for each coral sample, including estimated proportion of clade D at three different loci, the average and standard deviation across the three proportions and the total number of sequence reads used in these estimations

From: Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodiniumclade D

Colony

Treatment

Proportion Clade D

Standard deviation

Total # reads

  

ITS1

ITS2

cp 23S

Average

  

1*

control

1.000

1.000

1.000

1.000

0.000

226

1*

heated

0.994

1.000

1.000

0.998

0.004

268

2*

control

0.973

1.000

1.000

0.991

0.015

206

2*

heated

1.000

1.000

1.000

1.000

0.000

169

3*

control

0.990

1.000

0.984

0.991

0.008

389

6*

control

0.974

1.000

0.938

0.971

0.031

236

6*

heated

1.000

0.984

0.879

0.954

0.065

123

9*

control

0.974

1.000

1.000

0.991

0.015

126

9*

heated

0.990

1.000

0.981

0.990

0.009

348

31^

control

0.013

0.000

0.006

0.006

0.006

645

31^

heated

0.006

0.000

0.009

0.005

0.005

519

40^

control

0.000

0.000

0.000

0.000

0.000

219

40^

heated

0.011

0.024

0.000

0.012

0.012

202

44*

control

0.993

0.977

0.986

0.986

0.008

507

44^

heated

0.005

0.000

0.005

0.003

0.003

632

45

control

0.091

0.274

0.336

0.234

0.128

168

45^

heated

0.037

0.074

0.000

0.037

0.037

69

55^

control

0.039

0.013

0.064

0.038

0.026

704

55^

heated

0.031

0.000

0.036

0.022

0.020

636

61

control

0.439

0.387

0.587

0.471

0.104

521

61

heated

0.785

0.782

0.789

0.785

0.004

621

65^

control

0.000

0.012

0.038

0.017

0.020

240

65^

heated

0.000

0.000

0.000

0.000

0.000

583

68

control

0.361

0.108

0.099

0.189

0.149

77

68^

heated

0.000

0.000

0.000

0.000

0.000

290

70^

control

0.011

0.022

0.057

0.030

0.024

391

70^

heated

0.005

0.039

0.035

0.026

0.018

380

71*

control

0.983

1.000

0.952

0.978

0.024

563

71*

heated

0.980

0.992

0.943

0.971

0.025

599

75

control

1.000

1.000

0.829

0.943

0.098

101

75

heated

1.000

1.000

1.000

1.000

0.000

20

  1. For read count breakdowns for each individual locus see Additional file 3: Table S3. The symbols next to colony numbers indicate samples that were used in the de novo transcriptome assemblies: ^ for clade C Symbiodinium, * for clade D. ITS1 & ITS2=internal transcribed spacer regions 1 and 2, cp 23S=chloroplast 23S rRNA.