TY - JOUR AU - Mayer, M. P. AU - Bukau, B. PY - 2005 DA - 2005// TI - Hsp70 chaperones: cellular functions and molecular mechanism JO - Cell Mol Life Sci VL - 62 UR - https://doi.org/10.1007/s00018-004-4464-6 DO - 10.1007/s00018-004-4464-6 ID - Mayer2005 ER - TY - JOUR AU - Young, J. C. PY - 2010 DA - 2010// TI - Mechanisms of the Hsp70 chaperone system JO - Biochem Cell Biol VL - 88 UR - https://doi.org/10.1139/O09-175 DO - 10.1139/O09-175 ID - Young2010 ER - TY - JOUR AU - Morano, K. A. PY - 2007 DA - 2007// TI - New tricks for an old dog: the evolving world of Hsp70 JO - Ann N Y Acad Sci VL - 1113 UR - https://doi.org/10.1196/annals.1391.018 DO - 10.1196/annals.1391.018 ID - Morano2007 ER - TY - JOUR AU - Kampinga, H. H. AU - Craig, E. A. PY - 2010 DA - 2010// TI - The HSP70 chaperone machinery: J proteins as drivers of functional specificity JO - Nat Rev Mol Cell Biol VL - 11 UR - https://doi.org/10.1038/nrm2941 DO - 10.1038/nrm2941 ID - Kampinga2010 ER - TY - JOUR AU - Harrison, C. PY - 2003 DA - 2003// TI - GrpE, a nucleotide exchange factor for DnaK JO - Cell Stress Chaperones VL - 8 UR - https://doi.org/2.0.CO;2 DO - 2.0.CO;2 ID - Harrison2003 ER - TY - JOUR AU - Laloraya, S. AU - Gambill, B. D. AU - Craig, E. A. PY - 1994 DA - 1994// TI - A role for a eukaryotic GrpE-related protein, Mge1p, in protein translocation JO - Proc Natl Acad Sci USA VL - 91 UR - https://doi.org/10.1073/pnas.91.14.6481 DO - 10.1073/pnas.91.14.6481 ID - Laloraya1994 ER - TY - JOUR AU - Schroda, M. AU - Vallon, O. AU - Whitelegge, J. P. AU - Beck, C. F. AU - Wollman, F. A. PY - 2001 DA - 2001// TI - The chloroplastic GrpE homolog of Chlamydomonas: two isoforms generated by differential splicing JO - Plant Cell VL - 13 UR - https://doi.org/10.1105/tpc.13.12.2823 DO - 10.1105/tpc.13.12.2823 ID - Schroda2001 ER - TY - JOUR AU - Alberti, S. AU - Esser, C. AU - Hohfeld, J. PY - 2003 DA - 2003// TI - BAG-1–a nucleotide exchange factor of Hsc70 with multiple cellular functions JO - Cell Stress Chaperones VL - 8 UR - https://doi.org/2.0.CO;2 DO - 2.0.CO;2 ID - Alberti2003 ER - TY - JOUR AU - Craig, E. A. AU - Huang, P. AU - Aron, R. AU - Andrew, A. PY - 2006 DA - 2006// TI - The diverse roles of J-proteins, the obligate Hsp70 co-chaperone JO - Rev Physiol Biochem Pharmacol VL - 156 ID - Craig2006 ER - TY - JOUR AU - Liberek, K. AU - Marszalek, J. AU - Ang, D. AU - Georgopoulos, C. AU - Zylicz, M. PY - 1991 DA - 1991// TI - Escherichia coli DnaJ and GrpE heat shock proteins jointly stimulate ATPase activity of DnaK JO - Proc Natl Acad Sci USA VL - 88 UR - https://doi.org/10.1073/pnas.88.7.2874 DO - 10.1073/pnas.88.7.2874 ID - Liberek1991 ER - TY - JOUR AU - Walsh, P. AU - Bursac, D. AU - Law, Y. C. AU - Cyr, D. AU - Lithgow, T. PY - 2004 DA - 2004// TI - The J-protein family: modulating protein assembly, disassembly and translocation JO - EMBO Rep VL - 5 UR - https://doi.org/10.1038/sj.embor.7400172 DO - 10.1038/sj.embor.7400172 ID - Walsh2004 ER - TY - JOUR AU - Qiu, X. B. AU - Shao, Y. M. AU - Miao, S. AU - Wang, L. PY - 2006 DA - 2006// TI - The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones JO - Cell Mol Life Sci VL - 63 UR - https://doi.org/10.1007/s00018-006-6192-6 DO - 10.1007/s00018-006-6192-6 ID - Qiu2006 ER - TY - JOUR AU - Boorstein, W. R. AU - Ziegelhoffer, T. AU - Craig, E. A. PY - 1994 DA - 1994// TI - Molecular evolution of the HSP70 multigene family JO - J Mol Evol VL - 38 UR - https://doi.org/10.1007/BF00175490 DO - 10.1007/BF00175490 ID - Boorstein1994 ER - TY - JOUR AU - Renner, T. AU - Waters, E. R. PY - 2007 DA - 2007// TI - Comparative genomic analysis of the Hsp70s from five diverse photosynthetic eukaryotes JO - Cell Stress Chaperones VL - 12 UR - https://doi.org/10.1379/CSC-230R1.1 DO - 10.1379/CSC-230R1.1 ID - Renner2007 ER - TY - JOUR AU - Nordhues, A. AU - Miller, S. M. AU - Muhlhaus, T. AU - Schroda, M. PY - 2010 DA - 2010// TI - New insights into the roles of molecular chaperones in Chlamydomonas and Volvox JO - Int Rev Cell Mol Biol VL - 285 UR - https://doi.org/10.1016/B978-0-12-381047-2.00002-5 DO - 10.1016/B978-0-12-381047-2.00002-5 ID - Nordhues2010 ER - TY - JOUR AU - Macario, A. J. AU - Brocchieri, L. AU - Shenoy, A. R. AU - Conway de Macario, E. PY - 2006 DA - 2006// TI - Evolution of a protein-folding machine: genomic and evolutionary analyses reveal three lineages of the archaeal hsp70(dnaK) gene JO - J Mol Evol VL - 63 UR - https://doi.org/10.1007/s00239-005-6207-1 DO - 10.1007/s00239-005-6207-1 ID - Macario2006 ER - TY - JOUR AU - Gribaldo, S. AU - Lumia, V. AU - Creti, R. AU - de Macario, E. C. AU - Sanangelantoni, A. AU - Cammarano, P. PY - 1999 DA - 1999// TI - Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein JO - J Bacteriol VL - 181 ID - Gribaldo1999 ER - TY - JOUR AU - Lopez-Garcia, P. AU - Brochier, C. AU - Moreira, D. AU - Rodriguez-Valera, F. PY - 2004 DA - 2004// TI - Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers JO - Environ Microbiol VL - 6 UR - https://doi.org/10.1046/j.1462-2920.2003.00533.x DO - 10.1046/j.1462-2920.2003.00533.x ID - Lopez-Garcia2004 ER - TY - JOUR AU - DeLong, E. F. PY - 1992 DA - 1992// TI - Archaea in coastal marine environments JO - Proc Natl Acad Sci USA VL - 89 UR - https://doi.org/10.1073/pnas.89.12.5685 DO - 10.1073/pnas.89.12.5685 ID - DeLong1992 ER - TY - JOUR AU - Fuhrman, J. A. AU - McCallum, K. AU - Davis, A. A. PY - 1992 DA - 1992// TI - Novel major archaebacterial group from marine plankton JO - Nature VL - 356 UR - https://doi.org/10.1038/356148a0 DO - 10.1038/356148a0 ID - Fuhrman1992 ER - TY - JOUR AU - Brochier-Armanet, C. AU - Boussau, B. AU - Gribaldo, S. AU - Forterre, P. PY - 2008 DA - 2008// TI - Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota JO - Nat Rev Microbiol VL - 6 UR - https://doi.org/10.1038/nrmicro1852 DO - 10.1038/nrmicro1852 ID - Brochier-Armanet2008 ER - TY - JOUR AU - Brochier-Armanet, C. AU - Gribaldo, S. AU - Forterre, P. PY - 2012 DA - 2012// TI - Spotlight on the Thaumarchaeota JO - ISME J VL - 6 UR - https://doi.org/10.1038/ismej.2011.145 DO - 10.1038/ismej.2011.145 ID - Brochier-Armanet2012 ER - TY - JOUR AU - Pester, M. AU - Schleper, C. AU - Wagner, M. PY - 2011 DA - 2011// TI - The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology JO - Curr Opin Microbiol VL - 14 UR - https://doi.org/10.1016/j.mib.2011.04.007 DO - 10.1016/j.mib.2011.04.007 ID - Pester2011 ER - TY - JOUR AU - Dorn, K. V. AU - Willmund, F. AU - Schwarz, C. AU - Henselmann, C. AU - Pohl, T. AU - Hess, B. AU - Veyel, D. AU - Usadel, B. AU - Friedrich, T. AU - Nickelsen, J. PY - 2010 DA - 2010// TI - Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe-S clusters and interact with stromal HSP70B JO - Biochem J VL - 427 UR - https://doi.org/10.1042/BJ20091412 DO - 10.1042/BJ20091412 ID - Dorn2010 ER - TY - JOUR AU - Brochier-Armanet, C. AU - Forterre, P. AU - Gribaldo, S. PY - 2011 DA - 2011// TI - Phylogeny and evolution of the Archaea: one hundred genomes later JO - Curr Opin Microbiol VL - 14 UR - https://doi.org/10.1016/j.mib.2011.04.015 DO - 10.1016/j.mib.2011.04.015 ID - Brochier-Armanet2011 ER - TY - JOUR AU - Adl, S. M. AU - Simpson, A. G. AU - Farmer, M. A. AU - Andersen, R. A. AU - Anderson, O. R. AU - Barta, J. R. AU - Bowser, S. S. AU - Brugerolle, G. AU - Fensome, R. A. AU - Fredericq, S. PY - 2005 DA - 2005// TI - The new higher level classification of eukaryotes with emphasis on the taxonomy of protists JO - J Eukaryot Microbiol VL - 52 UR - https://doi.org/10.1111/j.1550-7408.2005.00053.x DO - 10.1111/j.1550-7408.2005.00053.x ID - Adl2005 ER - TY - JOUR AU - Hallam, S. J. AU - Konstantinidis, K. T. AU - Putnam, N. AU - Schleper, C. AU - Watanabe, Y. AU - Sugahara, J. AU - Preston, C. AU - de la Torre, J. AU - Richardson, P. M. AU - DeLong, E. F. PY - 2006 DA - 2006// TI - Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum JO - Proc Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0608549103 DO - 10.1073/pnas.0608549103 ID - Hallam2006 ER - TY - JOUR AU - Walker, C. B. AU - de la Torre, J. R. AU - Klotz, M. G. AU - Urakawa, H. AU - Pinel, N. AU - Arp, D. J. AU - Brochier-Armanet, C. AU - Chain, P. S. AU - Chan, P. P. AU - Gollabgir, A. PY - 2010 DA - 2010// TI - Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea JO - Proc Natl Acad Sci USA VL - 107 UR - https://doi.org/10.1073/pnas.0913533107 DO - 10.1073/pnas.0913533107 ID - Walker2010 ER - TY - JOUR AU - Blainey, P. C. AU - Mosier, A. C. AU - Potanina, A. AU - Francis, C. A. AU - Quake, S. R. PY - 2011 DA - 2011// TI - Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0016626 DO - 10.1371/journal.pone.0016626 ID - Blainey2011 ER - TY - JOUR AU - Kim, B. K. AU - Jung, M. Y. AU - Yu, D. S. AU - Park, S. J. AU - Oh, T. K. AU - Rhee, S. K. AU - Kim, J. F. PY - 2011 DA - 2011// TI - Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1 JO - J Bacteriol VL - 193 UR - https://doi.org/10.1128/JB.05717-11 DO - 10.1128/JB.05717-11 ID - Kim2011 ER - TY - CHAP AU - Spang, A. AU - Poehlein, A. AU - Offre, P. AU - Zumbragel, S. AU - Haider, S. AU - Rychlik, N. AU - Nowka, B. AU - Schmeisser, C. AU - Lebedeva, E. V. AU - Rattei, T. PY - 2012 DA - 2012// TI - The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations BT - Environmental microbiology ID - Spang2012 ER - TY - JOUR AU - Nunoura, T. AU - Takaki, Y. AU - Kakuta, J. AU - Nishi, S. AU - Sugahara, J. AU - Kazama, H. AU - Chee, G. J. AU - Hattori, M. AU - Kanai, A. AU - Atomi, H. PY - 2011 DA - 2011// TI - Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1228 DO - 10.1093/nar/gkq1228 ID - Nunoura2011 ER - TY - JOUR AU - Keeling, P. J. PY - 2010 DA - 2010// TI - The endosymbiotic origin, diversification and fate of plastids JO - Philos Trans R Soc Lond B Biol Sci VL - 365 UR - https://doi.org/10.1098/rstb.2009.0103 DO - 10.1098/rstb.2009.0103 ID - Keeling2010 ER - TY - JOUR AU - Deschamps, P. AU - Moreira, D. PY - 2009 DA - 2009// TI - Signal conflicts in the phylogeny of the primary photosynthetic eukaryotes JO - Mol Biol Evol VL - 26 UR - https://doi.org/10.1093/molbev/msp189 DO - 10.1093/molbev/msp189 ID - Deschamps2009 ER - TY - JOUR AU - Criscuolo, A. AU - Gribaldo, S. PY - 2011 DA - 2011// TI - Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr108 DO - 10.1093/molbev/msr108 ID - Criscuolo2011 ER - TY - JOUR AU - Geissinger, O. AU - Herlemann, D. P. AU - Morschel, E. AU - Maier, U. G. AU - Brune, A. PY - 2009 DA - 2009// TI - The ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the first cultivated representative of the termite group 1 phylum JO - Appl Environ Microbiol VL - 75 UR - https://doi.org/10.1128/AEM.02697-08 DO - 10.1128/AEM.02697-08 ID - Geissinger2009 ER - TY - JOUR AU - Spang, A. AU - Hatzenpichler, R. AU - Brochier-Armanet, C. AU - Rattei, T. AU - Tischler, P. AU - Spieck, E. AU - Streit, W. AU - Stahl, D. A. AU - Wagner, M. AU - Schleper, C. PY - 2010 DA - 2010// TI - Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota JO - Trends Microbiol VL - 18 UR - https://doi.org/10.1016/j.tim.2010.06.003 DO - 10.1016/j.tim.2010.06.003 ID - Spang2010 ER - TY - JOUR AU - Gupta, R. S. PY - 1998 DA - 1998// TI - What are archaebacteria: life's third domain or monoderm prokaryotes related to Gram-positive bacteria? A new proposal for the classification of prokaryotic organisms JO - Mol Microbiol VL - 229 UR - https://doi.org/10.1046/j.1365-2958.1998.00978.x DO - 10.1046/j.1365-2958.1998.00978.x ID - Gupta1998 ER - TY - JOUR AU - Griffiths, E. AU - Gupta, R. S. PY - 2001 DA - 2001// TI - The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga-Flavobacterium-Bacteroides division JO - Microbiology VL - 147 UR - https://doi.org/10.1099/00221287-147-9-2611 DO - 10.1099/00221287-147-9-2611 ID - Griffiths2001 ER - TY - JOUR AU - Gupta, R. S. PY - 2011 DA - 2011// TI - Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes JO - Antonie Van Leeuwenhoek VL - 100 UR - https://doi.org/10.1007/s10482-011-9616-8 DO - 10.1007/s10482-011-9616-8 ID - Gupta2011 ER - TY - JOUR AU - Philippe, H. AU - Budin, K. AU - Moreira, D. PY - 1999 DA - 1999// TI - Horizontal transfers confuse the prokaryotic phylogeny based on the HSP70 protein family JO - Mol Microbiol VL - 31 UR - https://doi.org/10.1046/j.1365-2958.1999.01185.x DO - 10.1046/j.1365-2958.1999.01185.x ID - Philippe1999 ER - TY - JOUR AU - Gribaldo, S. AU - Brochier-Armanet, C. PY - 2006 DA - 2006// TI - The origin and evolution of Archaea: a state of the art JO - Philos Trans R Soc Lond B Biol Sci VL - 361 UR - https://doi.org/10.1098/rstb.2006.1841 DO - 10.1098/rstb.2006.1841 ID - Gribaldo2006 ER - TY - JOUR AU - Groussin, M. AU - Gouy, M. PY - 2011 DA - 2011// TI - Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr098 DO - 10.1093/molbev/msr098 ID - Groussin2011 ER - TY - JOUR AU - Puigbo, P. AU - Pasamontes, A. AU - Garcia-Vallve, S. PY - 2008 DA - 2008// TI - Gaining and losing the thermophilic adaptation in prokaryotes JO - Trends in genetics: TIG VL - 24 UR - https://doi.org/10.1016/j.tig.2007.10.005 DO - 10.1016/j.tig.2007.10.005 ID - Puigbo2008 ER - TY - JOUR AU - Huang, J. AU - Gogarten, J. P. PY - 2006 DA - 2006// TI - Ancient horizontal gene transfer can benefit phylogenetic reconstruction JO - Trends in genetics: TIG VL - 22 UR - https://doi.org/10.1016/j.tig.2006.05.004 DO - 10.1016/j.tig.2006.05.004 ID - Huang2006 ER - TY - JOUR AU - Douzery, E. J. AU - Snell, E. A. AU - Bapteste, E. AU - Delsuc, F. AU - Philippe, H. PY - 2004 DA - 2004// TI - The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils? JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0403984101 DO - 10.1073/pnas.0403984101 ID - Douzery2004 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Katoh, K. AU - Misawa, K. AU - Kuma, K. AU - Miyata, T. PY - 2002 DA - 2002// TI - MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf436 DO - 10.1093/nar/gkf436 ID - Katoh2002 ER - TY - JOUR AU - Do, C. B. AU - Mahabhashyam, M. S. AU - Brudno, M. AU - Batzoglou, S. PY - 2005 DA - 2005// TI - ProbCons: Probabilistic consistency-based multiple sequence alignment JO - Genome Res VL - 15 UR - https://doi.org/10.1101/gr.2821705 DO - 10.1101/gr.2821705 ID - Do2005 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Philippe, H. PY - 1993 DA - 1993// TI - MUST, a computer package of Management Utilities for Sequences and Trees JO - Nucleic Acids Res VL - 21 UR - https://doi.org/10.1093/nar/21.22.5264 DO - 10.1093/nar/21.22.5264 ID - Philippe1993 ER - TY - JOUR AU - Jobb, G. AU - von Haeseler, A. AU - Strimmer, K. PY - 2004 DA - 2004// TI - TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics JO - BMC Evol Biol VL - 4 UR - https://doi.org/10.1186/1471-2148-4-18 DO - 10.1186/1471-2148-4-18 ID - Jobb2004 ER - TY - JOUR AU - Guindon, S. AU - Gascuel, O. PY - 2003 DA - 2003// TI - A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood JO - Syst Biol VL - 52 UR - https://doi.org/10.1080/10635150390235520 DO - 10.1080/10635150390235520 ID - Guindon2003 ER - TY - JOUR AU - Lartillot, N. AU - Lepage, T. AU - Blanquart, S. PY - 2009 DA - 2009// TI - PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp368 DO - 10.1093/bioinformatics/btp368 ID - Lartillot2009 ER - TY - JOUR AU - Ronquist, F. AU - Huelsenbeck, J. P. PY - 2003 DA - 2003// TI - MrBayes 3: Bayesian phylogenetic inference under mixed models JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg180 DO - 10.1093/bioinformatics/btg180 ID - Ronquist2003 ER - TY - JOUR AU - Shimodaira, H. PY - 2002 DA - 2002// TI - An approximately unbiased test of phylogenetic tree selection JO - Syst Biol VL - 51 UR - https://doi.org/10.1080/10635150290069913 DO - 10.1080/10635150290069913 ID - Shimodaira2002 ER -