From: MHC class II DQB diversity in the Japanese black bear, Ursus thibetanus japonicus
Species | Gene | No. of sample | No. of variant | Length | PBRs | Non-PBRs | Entire exon 2 region | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
dN/dxS | d N | dN/dS | d N | dN/dS | d N | d S | |||||||||||||
Ursidae | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | ||||||||
Japanese black beara | DQB | 184k | 43k | 267 bp | 3.83 | 0.11 | ± | 0.04 | 0.63 | 0.02 | ± | 0.01 | 1.48 | 0.04 | ± | 0.01 | 0.03 | ± | 0.01 |
Giant pandab | DQB1 | 121 | 6 | 267 bp | 1.33 | 0.02 | ± | 0.06 | 0.47 | 0.01 | ± | 0.02 | 0.71 | 0.02 | ± | 0.05 | 0.01 | ± | 0.03 |
Brown bear*c | DRB | 38 | 19 | 267 bp | 4.09 | 0.06 | ± | 0.29 | 0.72 | 0.02 | ± | 0.05 | 1.53 | 0.02 | ± | 0.07 | 0.02 | ± | 0.11 |
Other carnivores | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
African wild dogd | DRB | 320 | 19 | 267 bp | 5.28 | 0.06 | ± | 0.21 | 0.56 | 0.01 | ± | 0.02 | 1.72 | 0.02 | ± | 0.04 | 0.02 | ± | 0.07 |
Namibian cheetah*e | DRB | 139 | 4 | 237 bp | 2.01 | 0.06 | ± | 0.25 | 0.37 | 0.01 | ± | 0.05 | 0.76 | 0.04 | ± | 0.13 | 0.02 | ± | 0.10 |
European minkf | DRB | 20 | 9 | 228 bp | 1.78 | 0.06 | ± | 0.16 | 0.26 | 0.01 | ± | 0.02 | 0.65 | 0.03 | ± | 0.09 | 0.02 | ± | 0.06 |
Non-carnivores | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Water buffalo*g, h | DQB | 210 | 22 | 243 bp | 2.65 | 0.07 | ± | 0.37 | 0.92 | 0.03 | ± | 0.13 | 1.34 | 0.03 | ± | 0.14 | 0.03 | ± | 0.19 |
Ma's night monkeyi | DQB1 | 19 | 14 | 246 bp | 2.71 | 0.05 | ± | 0.19 | 0.95 | 0.02 | ± | 0.07 | 1.39 | 0.02 | ± | 0.07 | 0.02 | ± | 0.10 |
Yellow necked mousej | DRB | 146 | 27 | 216 bp | 7.75 | 0.09 | ± | 0.38 | 1.13 | 0.02 | ± | 0.06 | 2.46 | 0.02 | ± | 0.05 | 0.02 | ± | 0.12 |