From: MHC class II DQB diversity in the Japanese black bear, Ursus thibetanus japonicus
Method | Model code | Parameter estimates | Likelihood or confidential interval | Positively selected sites |
---|---|---|---|---|
Maximum likelihood (PAML) | M0 (one ratio) | ω = 0.41 | −1570 |  |
M1a (nearly neutral) | p0 = 0.85, p1 = 0.15 | −1386 |  | |
M2a (balancing selection) | ω2 = 7.00 | −1326 | β9**, β26**, β28**, β30**, β37** | |
M3 (discrete) | ω2 = 7.98 | −1325 |  | |
M7 (beta) | p = 0.05, q = 0.07 | −1394 |  | |
M8 (beta and ω) | ω = 5.71 | −1337 | β9**, β26**, β28**, β30**, β37** | |
Bayesian inference (OmegaMap) | − | ω = 1.80a | ω: 0.30 - 12.49a (95% HPD) | β9**, β22**, β26**, β28*, β29**, β30**, β37*, β50*, β57*, β68*, β84* |