Table 1 Characteristics of the datasets used
From: The origins of the evolutionary signal used to predict protein-protein interactions
| Â | SP-70 L POS | SP-70 L NEG | UP-50 L POS | UP-50 L NEG | UP-70 L POS | UP-70 L NEG |
|---|---|---|---|---|---|---|
Number of pairs | 42 | 92 | 86 | 201 | 65 | 107 |
Mean (± stdev) number of sequences per alignment | 15 ± 7 | 14 ± 4.4 | 32 ± 13 | 25 ± 12 | 25 ± 11 | 20 ± 7.8 |
Median number of sequences per alignment | 12 | 12 | 33 | 24 | 23 | 19 |
Full MSA | ||||||
Mean genetic distance | 1.297 | 1.694 | 1.567 | 1.779 | 1.394 | 1.548 |
Alignment Length | 582 | 687 | 865 | 1008 | 755 | 796 |
Dataset containing maximum of 20% gapped columns in a MSA | ||||||
Mean genetic distance | 1.198 | 1.581 | 1.369 | 1.556 | 1.253 | 1.391 |
Alignment Length | 420 | 502 | 491 | 598 | 516 | 540 |