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Table 4 Locus information and list of the primers used in this study

From: Demographic histories of adaptively diverged riparian and non-riparian species of Ainsliaea(Asteraceae) inferred from coalescent analyses using multiple nuclear loci

Locus

Best BLAST hit

E-value

Species

Gene

Primer name

Sequences 5'-3'

Primer source

GA2ox1

AB031206

1.00E-104

Lactuca sativa

gibberellin 2-oxidase 1

GA2ox1 Ai2 F

GACCAAGCGTGATTTACTCTG

Developed for this study

GA2ox1 R

TTCTCGCTCAATGGTGGTCCT

Developed for this study

CHS

X91343

8.00E-11

Leibnitzia anandria

chalcone synthase

1266 F

ATCACCCACCTCATCTTCTGCAC

Álvarez et al.[40]

1990 R

TCCAAAAGATCGAGTTCCAGTC

Álvarez et al.[40]

GTF

AB070746

5.00E-06

Vigna angularis

glucosyltransferase-3

GTF F

ACCAGATGCACCCTATTCATCT

Developed for this study

GTF R

AAAGCGTGGTGGTGCTGATT

Developed for this study

CPPS1

AF034545

1.00E-32

Stevia rebaudiana

copalyl pyrophosphate synthase (Cpps1)

CPPS1 F

GAKGGAGAGATAACTGTATC

Developed for this study

CPPS1 R

GGKTYCGTCTTGCATAGATT

Developed for this study

A25

EF519751

1.00E-18

Carthamus oxyacanthus

Unknown

A25 F

TTGCATGSTCTTATCAGTCC

Chapman et al.[41]

A25 R

GAAGABCCCATCCARCAGAAGAG

Chapman et al.[41]

A27

EF519770

4.00E-11

Carthamus oxyacanthus

Unknown

A27 F

CTTGCAWTGAATGTCATGTGGAAG

Chapman et al.[41]

A27 R

GCTCCCCARCATTTCA

Chapman et al.[41]

B12

EF519836

3.00E-68

Carthamus lanatus

Unknown

B12 F

CAAGTGGCTGCAGCCATGGG

Chapman et al.[41]

B12 R

ACATCRGGMACCATTCCWCCGGTGT

Chapman et al.[41]

D10

HM640003

5.00E-15

Medicago truncatula

somatic embryogenesis receptor kinase 5 (SERK5)

D10 F

GATTGCTYGTTTATCCCTACATGG

Chapman et al.[41]

D10 R

ATATTTGCAGCTTTCACATC

Chapman et al.[41]

D13

No hit

-

-

Unknown

D13 F

ATGTCAGGTTTTGGRCAYCGTGT

Chapman et al.[41]

D13 R

CCAGARTAGAAATCAACATTYGGGTAC

Chapman et al.[41]

D22

EF484030

5.00E-19

Carthamus tinctorius

Unknown

D22 F

CGHAGAACTCCAGCTGAA

Chapman et al.[41]

     

D22 R

GCTTCTTCTTGCCTGATGCT

Chapman et al.[41]