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Table 1 Data characteristics and analysis summaries

From: Cryptic variation in an ecological indicator organism: mitochondrial and nuclear DNA sequence data confirm distinct lineages of Baetis harrisoni Barnard (Ephemeroptera: Baetidae) in southern Africa

  

Characters

Parsimony analysis

Bayesian analysis

Dataset

ntax

bp

# Var

# Pi

% Pi

# trees

Score

CI

RI

Model (AIC)

lnL

PEPCK

52

357

58

33

9.2

10000

49

0.776

0.969

K80 + G

−1063.23 (1P)

EF1α

21

458

33

14

3.1

5

18

0.833

0.957

GTR + I

−913.51 (1P)

16S

50

502

71

65

13.0

10000

104

0.779

0.965

GTR + I

−1393.33 (1P)

COI

50

618

224

191

31.0

15

424

0.642

0.936

GTR + I + G

−3016.22 (1P)

PEPCK + 16S + COI

67

1477

353

289

20.0

10000

586

0.667

0.943

GTR + I + G

−5724.33* (1P)

−5315.31* (3P)

  1. The number of specimens with sequence data (ntax), number of variable (# Var), parsimony informative (# Pi), percent parsimony informative (% Pi) and total number of base pairs (bp) is reported. The parsimony search summary comprises the number of trees retained (# trees), tree length (score), Consistence Index (CI) and Retention Index (RI). The Bayesian analysis summary comprises the model selected by MrModeltest, the harmonic mean of the estimated marginal likelihoods and the partitioning strategy indicated in brackets; an asterisk indicates the value is the re-estimated marginal likelihood using the generalized stepping stone model.
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BMC Ecology and Evolution

ISSN: 2730-7182

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