Table 1 Assembly statistics for IC11 and UGA10
From: A genome-wide study of recombination rate variation in Bartonella henselae
IC11 | UGA10 | |
|---|---|---|
Genome sequence data | ||
Total number of reads | 351,460 | 124,436 |
Total number of bases | 41,503,657 | 38,103,176 |
Number of reads (454) | 349,311 | 119,767 |
Number of bases (454) | 39,750,103 | 32,210,581 |
Average read length (454) | 114 | 269 |
Instrument (454) | GS20 (half plate) | FLX (1 plate) |
Number of reads (Sanger) | 2,149 | 4,669 |
Number of bases (Sanger) | 1,753,554 | 5,892,595 |
Assembly to reference genome Houston-1 | ||
Number of contigs (>1 kb, cov. > 8X) | 76 | 85 |
Number of reads | 273,164 | 108,834 |
Number of bases | 1,876,302 | 1,804,694 |
De novo assembly | ||
Number of contigs (>1 kb, cov. > 8X) | 4 | 13 |
Number of reads | 1,503 | 1,717 |
Number of bases | 5,424 | 32,530 |
Merged assembly | ||
Number of contigs (>1 kb, cov. > 8X) | 80 | 98 |
Number of reads | 274,667 | 110,551 |
Number of bases | 1,881,726 | 1,837,224 |
N50* | 99,920 | 42,911 |
N90* | 11,628 | 8,307 |
Largest contig | 296,010 | 194,293 |
Read coverage | 16X | 12X |