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Table 1 Availableprotein 3D-structures of +ssRNA and dsRNA virus families

From: Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods

Virus

Family

Nucleicacid

Genome

RdRp

Capsidprotein PDB ID

RNP

Protease

    

PDB ID

( Triangulation)

PDB ID

PDB ID

Infectious bursal disease virus

Birnaviridae

dsRNA

bipartite

2pgg

1wcd (T = 13)

2r18

 

Infectious pancreatic necrosis virus

Birnaviridae

dsRNA

bipartite

2yi9

3ide (T = 13)

 

2pnm

Blotched snakehead virus

Birnaviridae

dsRNA

bipartite

 

(T = 13)

 

2gef

Tellina virus 1

Birnaviridae

dsRNA

bipartite

   

3p06

Bacteriophage?6

Cystoviridae

dsRNA

tripartite

1uvj

(T = 13)

  

Black beetle virus

Nodaviridae

+ssRNA

bipartite

 

2bbv (T = 3)

  

N. capensis Ω virus

Alphatetraviridae

+ssRNA

bipartite

 

1ohf (T = 4)

  

T. assigna, E. elaease viruses

Permutotetraviridae

+ssRNA

monopartite

 

(T = 4)

  

Drosophila A virus

Unassigned

+ssRNA

monopartite

 

(T = 3)

  

Poliovirus

Picornaviridae

+ssRNA

monopartite

2ijf

1hxs (T = 3)

  

Foot and mouth disease virus

Picornaviridae

+ssRNA

monopartite

2ec0

1bbt (T = 3)

  

Human rhinovirus type 14

Picornaviridae

+ssRNA

monopartite

1xr7

1aym (T = 3)

  

Norwalk virus (gastroenteritis)

Caliciviridae

+ssRNA

monopartite

1sh0

1ihm (T = 3)

  

Rabbit haemorrhagic disease virus

Caliciviridae

+ssRNA

monopartite

1khv

(T = 3)

  

Hepatitis C virus NS5B

Flaviviridae

+ssRNA

monopartite

2giq

   

Bovine viral diarrhea virus

Flaviviridae

+ssRNA

monopartite

1 s48