Figure 2

Analysis of the pol 82–90 Ks-conserved region. (A) Ka and Ks values for each position in the protein. The pol 82–90 region is boxed. (B) Codon adaptation index analysis based on the human codon usage in highly expressed genes (see Methods). The pol 82–90 region is boxed. (C) RNA secondary structure prediction, including the flanking region (see text for details). Red ovals encircling triplets of nucleotides mark the beginning and end of pol 82–90 within the predicted region.