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Life cycle evolution: was the eumetazoan ancestor a holopelagic, planktotrophic gastraea?
BMC Evolutionary Biology volume 13, Article number: 171 (2013)
Two theories for the origin of animal life cycles with planktotrophic larvae are now discussed seriously: The terminal addition theory proposes a holopelagic, planktotrophic gastraea as the ancestor of the eumetazoans with addition of benthic adult stages and retention of the planktotrophic stages as larvae, i.e. the ancestral life cycles were indirect. The intercalation theory now proposes a benthic, deposit-feeding gastraea as the bilaterian ancestor with a direct development, and with planktotrophic larvae evolving independently in numerous lineages through specializations of juveniles.
Information from the fossil record, from mapping of developmental types onto known phylogenies, from occurrence of apical organs, and from genetics gives no direct information about the ancestral eumetazoan life cycle; however, there are plenty of examples of evolution from an indirect development to direct development, and no unequivocal example of evolution in the opposite direction. Analyses of scenarios for the two types of evolution are highly informative. The evolution of the indirect spiralian life cycle with a trochophora larva from a planktotrophic gastraea is explained by the trochophora theory as a continuous series of ancestors, where each evolutionary step had an adaptational advantage. The loss of ciliated larvae in the ecdysozoans is associated with the loss of outer ciliated epithelia. A scenario for the intercalation theory shows the origin of the planktotrophic larvae of the spiralians through a series of specializations of the general ciliation of the juvenile. The early steps associated with the enhancement of swimming seem probable, but the following steps which should lead to the complicated downstream-collecting ciliary system are without any advantage, or even seem disadvantageous, until the whole structure is functional. None of the theories account for the origin of the ancestral deuterostome (ambulacrarian) life cycle.
All the available information is strongly in favor of multiple evolution of non-planktotrophic development, and only the terminal addition theory is in accordance with the Darwinian theory by explaining the evolution through continuous series of adaptational changes. This implies that the ancestor of the eumetazoans was a holopelagic, planktotrophic gastraea, and that the adult stages of cnidarians (sessile) and bilaterians (creeping) were later additions to the life cycle. It further implies that the various larval types are of considerable phylogenetic value.
The origin of the indirect (pelago-benthic, biphasic) life cycle with a ciliated, planktotrophic larva and a benthic adult has been discussed for more than a century. Many authors have favored the idea that the planktotrophic larvae are ancestral in the (eu)metazoans, for example [1–4], whereas most of the recent authors believe that the feeding larvae are specializations of the ontogeny of an ancestral, direct development, for example [5–7] (see Figure 1). There are many cases of intermediates between indirect development with lecithotrophic larvae and direct development, so in the following I will discuss development with planktotrophic larvae versus development with lecithotrophic larvae or direct development (Figure 2 and Table 1).
Haeckel’s famous gastraea theory  proposed that all metazoans have evolved from a pelagic, planktotrophic ancestor called gastraea, and this implies that the benthic adult stages have been added to the life cycle in one or more lineages. This has been called the terminal addition theory. A planktotrophic gastrula stage is found in a number of anthozoans, and non-feeding gastrula stages are found in representatives of almost all phyla. In lineages with indirect development, the feeding larvae have become modified to the many different larval forms we see today. The terminal addition theory has sometimes, quite self-contradictory, been called the larva-first theory. More precisely, Hatschek  pointed to the similarities between some rotifers and the trochophora larvae of annelids and molluscs and proposed that the ancestor of the Protostomia (which he called Zygoneura) (Figure 3) was a holopelagic, planktotrophic gastrula-like organism called protrochula; the indirect development evolved when a benthic stage was added and the planktonic stage was modified into a trochophora larva. This seems to be the first well-founded scenario for the evolution of an indirect life cycle.
An alternative theory interprets the various planktotrophic larval types as numerous independent deviations from an ancestral direct development of a planuloid ancestor; this has been called the intercalation or interpolation theory, for example [5, 10]. A variation of the intercalation theory, viz. that the planktotrophic trochophores are evolved from non-feeding larvae with a prototroch through addition of metatroch and adoral ciliary zone, is favored by a number of authors [11–13]. The homology of spiralian prototrochs seems unquestioned, and the origin of metatroch and adoral ciliary zone of the ciliary filter feeding trochophores is discussed below.
The morphology of the (eu) metazoan ancestor is of course of great importance for the discussion, and a number of more or less realistic ideas have been put forward over the last one and a half century. Some earlier theories, such as the cellularization or ciliate-acoel theory, envisaged the evolution of a planula-like metazoan ancestor from a ciliate-like ancestor which became cellularized [14, 15]. However, the molecular phylogeny has clearly shown that the ciliates are far from the metazoans on the tree of life . Parts of this theory survive with modifications imbedded in some variations of the planula theory (see below). Other theories, such as the “biphasic life cycle theory” , the “complex bilaterian ancestor theory” , and the “clonal asexual reproduction theory”  propose the origin of the bilaterian phyla from budding, colonial ancestors, but this finds support neither from morphology nor from molecular phylogeny. I will not pretend that I understand the early stages of the “synzoospore theory” , but the late evolutionary steps leading to the eumetazoan ancestor through specialization of a blastula to a gastrula and the loss of the sessile, filter-feeding adult through “neoteny” is almost identical to the process proposed by me , except that I now call the evolutionary process “truncation” instead of neoteny . The “plakula theory”  proposes the specialization of the epithelium of a blastaea into a lower entoderm, used in feeding and locomotion, and an upper ectoderm; it can be seen as a variation of the gastraea theory. Here it should be emphasized that gastrulation is related to the separation of a digestive epithelium from a protective/locomotory epithelium, not just the creation of a multilayered organism as suggested by some authors . The gastrula consists of the archenteron lined by the digestive endoderm, surrounded by the locomotory ectoderm. The placozoan Trichoplax creeps on the digestive epithelium , but this is probably a specialization. A further specialization is seen in the parasitic hydroid colonies of the hydrozoan Polypodium, which live turned inside-out in sturgeon’s eggs with the digestive endoderm on the outside and small polypides inside the ectodermal invagination .
Only the gastraea/terminal addition and planula/intercalation theories are now more generally accepted, and they will be discussed in the following.
Several types of information have been used to infer ancestral life cycles, and it is important to consider all information when making inferences. However, it appears practical first to discuss the types of information separately.
This review will deal with the life cycle evolution of marine invertebrates with focus on phyla with ciliated “primary” larvae, i.e. Cnidaria, Spiralia and Ambulacraria. Ecdysozoa and Olfactores (Urochordata + Vertebrata) lack ciliated larvae and their larval stages are “secondary”, as are the nauplius larvae and the caterpillars [2, 3, 27]. The early cephalochordate larva is a ciliated, non-feeding gastrula.
Evidence from the fossil record
The only unequivocal information about evolution comes from the fossil record, and Late Precambrian and Early Cambrian fossils have been studied for evidence about the ancestral developmental type of the eumetazoans. Direct evidence about evolution from indirect to direct development or vice versa can be gathered from information about evolution of developmental types in later, well-known fossil lineages.
Microscopic embryos and larvae are usually without fossil parts and are therefore not likely to fossilize, but a few Ediacaran (Latest Precambrian) fossils have been interpreted as metazoan embryos. The small, spherical acritarchs from the Earliest Ediacaran (Doushantuo Formation) could be metazoan eggs with an elaborate egg membrane, but they could just as well be cysts of various algae [28, 29]. Globular fossils with a diameter of about 500 μm from the Doushantuo Formation have been interpreted as early cleavage stages of metazoan eggs [30, 31], but they have also been interpreted as giant bacteria , and new studies have concluded that the internal structures are incompatible with those of metazoan eggs and embryos .
Out of many thousand small globular fossils with a diameter of up to 200 μm from the Doushantuo Formation, a few, called Vernanimalcula, show internal structures which have been interpreted as surprisingly well-preserved bilaterian embryos with gut, paired coelomic sacs and a number of sensory organs, which should have been preserved through mineralization deposited on decaying tissues [34–36]. However, the original interpretation has been questioned, and a recent comparison of the original description with sections of decaying cyst-forming protists and acritarchs of similar age concluded that the “anatomical reconstruction [of Vernanimalcula as a bilaterian] is without foundation” . Putative cnidarian larvae from the same deposits  are of the same nature. So there is no direct information about the developmental type of the earliest eumetazoans.
Olivooides (first based on embryos, the adults were called Punctatus) from the slightly younger Dengying Formation through Lower Cambrian [39–41] have been interpreted as stem-group cnidarians. The adults resemble the fossil conulariids and the scyphistoma polyps of living coronate scyphozoans, but show a pentameric symmetry. However, the similar, co-occurring Quadrapyrgites is tetraradial. The development from the about 500 μm-diameter egg to juvenile is clearly direct, and the new observations indicate that a strobilation process was present, indicating scyphozoan affinities, and putative ephyrae were also observed.
A considerable number of Ediacaran (Vendian) fossils have been interpreted as bilaterians , but the metazoan nature of several forms has been questioned. Dickinsonia has been interpreted as a placozoan , and Kimberella as a mollusc . None of these fossils give information about type of development.
Representatives of the majority of Living metazoan phyla appear in the fossil record in the Cambrian, in the Early Cambrian (Atabdanian) Sirius Passet and Chengjiang faunas  and in the Middle Cambrian Burgess Shale . These old faunas comprise many soft bodied organisms, but only the fossils with hard skeletons have left information about developmental types. There is a well proven correlation between egg size and developmental type, with small eggs (usually about 100 μm or less in diameter) developing into planktotrophic larvae, whereas larger eggs usually develop into non-feeding stages , so the sizes of larval shells can give information about developmental types.
“Small shelly fossils” appear with increasing diversity through the Earliest Cambrian (Nemakit-Daldynian and Tommotian) and decline in the Middle Cambrian. They are mostly interpreted as molluscs, but a few as brachiopods and a number as extinct groups of uncertain affinities . Most of them are scales or spicules of larger animals and give no information about developmental types. However, a millimeter-sized, cap-shaped fossil, usually interpreted as an early helcionellid conchiferan helcionellid mollusc, has now been found forming the apex of a centimeter-sized limpet-like fossil, and this indicates that the organism was a stem-lineage gastropod with a planktotrophic larva  (Figure 4).
The Mollusca originated in the Late Precambrian , and there is no indication of an ancestral form with a shelled larva. Fossils of gastropods and bivalves are known from the Early Cambrian  (and see above). Gastropods, bivalves and some extinct forms retain larval shell(s) at the apex/umbo, which give indications about the type of larva. In Living species shells with a small embryonic shell (protoconch 1/prodissoconch I; the shell formed before the embryo hatches from the egg membrane) and a large larval shell (protoconch 2/prodissoconch II; formed during the planktotrophic phase), is characteristic of species with planktotrophic development. Species with direct development have a large embryonic shell and lack a larval shell . There is much discussion about the developmental type of the Cambrian molluscs, see for example [52–54]. Gastropoda probably originated in the Late Cambrian, and it appears that many of the early forms, including the helcionellid mentioned above, had larval shells and therefore planktotrophic development . The Early Cambrian bivalve Pojetaia had an embryonic shell which is large for a planktotrophic species (about 100 × 150 μm), but the size of the putative larval shell (about 300 μm) indicates the presence of a planktotrophic larva .
Studies of evolution of later gastropod groups with analyses of larval types are scarce, but an analysis of protoconchs of six families of fossil “neogastropods” from Early Tertiary of the Gulf of Mexico area revealed a low proportion of species with large protoconchs in the Early Palaeocene with increasing numbers into the Eocene, indicating evolution of direct development . Evolution of non-planktotrophic development from planktotrophic development was observed in a number of genera, such as Athelata, Agaronia, and Latirus, whereas evolution in the opposite direction was not observed.
Brachiopods can be traced back to the Early Cambrian, and the size of the larval shells of some of the earliest fossils indicate that the stem lineages of both Linguliformia and Rhynchonelliformia had planktotrophic larvae .
Echinoderms have a very extensive fossil record, with non-pentameric stem groups in the Cambrian , but none of these old fossils show any indication of their developmental type.
The developmental type of fossil echinoids can in some cases be inferred from three types of structures  (Figure 5): 1) Presence of brood pouches indicate direct development, 2) Extreme dimorphism of gonopore size indicate the presence of large eggs and therefore non-planktotrophy, and 3) Crystallographic orientation of genital plates: At metamorphosis of the planktotrophic echinopluteus larvae, the basal part of the calcareous skeletal rod of four of the large arms become retained in four of the genital plates, and they show a crystallographic orientation different from that of the remaining genital plate and of the other test plates. Species with direct development show identical crystallographic orientation in all plates . These three methods were applied to a large material of Upper Cretaceous spatangoids, and was clearly shown that the planktotrophic type of development was ancestral in the family and that non-planktotrophy evolved independently five times during the Campanian-Maastrichtian period (Figure 5), possibly related to environmental changes . No brooding or lecithotrophic echinoids have been found in older deposits .
The Precambrian/Early Cambrian fossils contain no unambiguous information about the ancestral developmental type of the eumetazoans. The earliest gastropods and bivalves probably had planktotrophic larvae. Observations on fossils from later periods contain well-documented examples of evolution of groups with non-planktonic life cycles in lineages with planktotrophic development, but apparently no examples of evolution in the opposite direction.
So, the fossil record indicates that the indirect development with planktotrophic larvae was ancestral.
Mapping of developmental types onto known phylogenies
The idea behind this method is that the distribution of different developmental types should make it possible to deduce the developmental types of ancestors of increasing age, and it has been used in cladistic analyses for example of polychaetes [13, 63–65]. However, the method builds on the assumption that gains and losses have the same weight, and this is obviously not the case for complicated structures, such as the highly specialized ciliary bands of trochophora larvae (Figure 6) which function as downstream-collecting structures based on the “catch-up principle”  (Figure 7). As shown below, larval structures can be lost through the silencing of just one gene (see the section “Genetics-related information”), and the evolution of the complicated ciliary bands of a trochophore from a uniformly ciliated larva has no adaptations-based explanation (see the section Scenarios below). So the method has apparently only little credibility when applied to larger groups, but it has been used on a number of smaller clades, and a few examples will be discussed below to demonstrate some of the pitfalls of the method.
Ecdysozoans lack ciliated outer epithelia completely (and therefore also primary larvae), and this is unquestionably an apomorphy . Cephalochordates have ciliated non-feeding larvae, but Urochordata + Vertebrata (=Olfactores) lack ciliated primary larvae. The remaining major eumetazoan (neuralian) clades have characteristic types of ciliated, feeding larvae: cnidarians have planula larvae, spiralians trochophora larvae, and ambulacrarians dipleurula larvae.
The cnidarian larva is usually called planula, a name originally given to the compact larva of the hydroid Eudendrium rameum. The term is now used for all types of cnidarian larvae, but also more widely for small compact lecithotrophic larvae, which is unfortunate because several anthozoans, such as the actinian Anthopleura and the solitary corals Caryophyllia and Fungia[69, 70], have feeding gastrula larvae. The anthozoans are apparently the basal group since some recent studies indicate that Medusozoa is an ingroup of the Anthozoa , so the feeding larva could well be ancestral.
Several spiralian phyla have representatives with indirect development with planktotrophic larvae. Hatschek  proposed the name trochophora in a general discussion of annelid development. In his famous, unfortunately unfinished “Lehrbuch”  he gave a more thorough discussion of the concept with special emphasis on nervous system and ciliary bands. He proposed that the trochophore was the larva of the ancestor of the Protostomia (Zygoneura). His seminal idea has been elaborated and modified by many subsequent authors, for example  and modified into the trochaea theory [74, 75] (see section “Scenarios” below). Trochophora larvae are characteristic of most spiralian phyla, but the larvae of bryozoans, phoronids and brachiopods are different and all the types will be discussed below.
Annelida, including Echiura, Sipuncula and Pogonophora, is now a well-documented clade , but unfortunately, its phylogeny is still not firmly resolved. Occurrence of planktotrophic trochophora larvae has been reported in a number of families: Oweniidae [77, 78], Serpulidae , Polygordiidae , Sabellariidae , Opheliidae , Echiuridae , Amphinomidae [3, 82], Spionidae , and Capitellidae . These families do not group together in any of the phylogenetic studies. Only very few of the planktotrophic annelid larvae have the telotroch, but all the ciliary bands considered as ancestral in the spiralians are found for example in the larvae of Polygordius and Echiurus[72, 85], and the telotroch is found in many of the lecithotrophic larvae . The occurrence of planktotrophic trochophora larvae in so many, not closely related polychaete families makes independent evolution of this larval type from non-feeding ancestors highly improbable. The cladistic analyses of Rouse [13, 63, 65] came to the conclusion that multiple evolution of the feeding larvae was the more parsimonious explanation. However, not all the just-mentioned families were included, and as mentioned above and discussed in the section “Scenarios” below), I don’t think that cladistic analyses are useful for characters where loss and gain are obviously not equally probable. In addition, a number of species show a remarkable plasticity of developmental types (see also poecilogony in the section “Genetics-related information” below).
Many serpulids, such as Spirobranchus, Serpula, Hydroides, and Pomatoceros[79, 86] have almost schematic, filter-feeding trochophora larvae, whereas members of the sister-family Sabellidae apparently all have lecithotrophic larvae. However, the larva of the sabellid Schizobranchia insignis is non-feeding but nevertheless develops the characteristic trochophore ciliary system, which even captures particles and transports them towards the mouth where they are rejected as the gut is not yet fully formed. This must be interpreted as a loss of the feeding function in connection with an increased amount of yolk, because the evolution of a complex structure as the ciliary feeding system without function has no adaptational value until complete (see section “Scenarios” below).
Thus, there is a considerable variation in polychaete development, but no pattern can be recognized indicating a de novo evolution of feeding larvae from ancestors with non-feeding larvae. The early radiation of the molluscan classes is still under discussion. Most recent studies of both the rich fossil record and the sequence data favor the monophyly of Aculifera and Conchifera . It seems probable that the ancestral mollusc had no larval shell and that the shelled larva is a conchiferan apomorphy. However, the indirect life cycle with a ciliated larva or embryos with a prototroch and in some cases a metatroch or a telotroch is predominant in all the classes except the Cephalopoda and must therefore be considered ancestral.
Only gastropods and bivalves have representatives with planktotrophic larvae. These larvae are called veligers because the locomotory and particle-collecting ciliary system of the trochophore is situated on a smaller or larger expansion called the velum. Of the major gastropod lineages Neritimorpha, Caenogastropoda and Heterobranchia have representatives with feeding veliger larvae, whereas the remaining two groups, Patellogastropoda and Vetigastropoda, only comprise species with non-feeding larvae with a prototroch . Analyses of smaller lineages, such as families or genera, for example the large genus Conus (Figure 8), the family Littorinidae [91, 92], the family Turritellidae  and the family Calyptraeidae [94, 95] strongly indicate that direct development has evolved independently a number of times within these clades. Only the genus Lacuna within the Littorinidae show indication of evolution of planktotrophic species from direct developing ancestors. However, the term direct development is highly ambiguous when applied to gastropods. The development within the egg capsules may show embryos with fully differentiated veliger larvae, such as in Cassidaria (now Galeodea) sp.  where the ciliary apparatus at the edge of the velum transports yolk particles to the mouth; later stages in its development within the egg capsule show complete resorption of the velum, so that the hatching juvenile looks as a small adult (Figure 9). This is classified as direct development because the first free stage is a juvenile, but the change from planktotrophic development to “direct” development has not been a change in morphology, but only a change in the amount of yolk and a postponement of hatching from the egg capsule. A fossil of this type would undoubtedly be classified as an indirect developer. It seems to be a common feature of “direct” developing gastropods to have a more or less differentiated velum during the intracapsular development [96, 97]. The term “larva” is usually defined as the stage from hatching to metamorphosis, but as mentioned for example by Hadfield (in ), this definition is more related to methods of dispersal than to changes in morphology; in most “direct-developing” gastropods, the morphological metamorphosis, with the loss of a velum or only of a prototroch, occurs before hatching from the egg capsule. If one would define the breaking of the fertilization membrane as the “hatching”, one could typify the above-mentioned gastropod veligers as intracapsular larvae (or “veliger-stage embryos” as suggested by Hadfield), but making definitions to cover all animals seems impossible .
The Bivalvia comprises the sister groups Protobranchia and Autobranchia , where the protobranchs have lecithotrophic pericalymma larvae and the autobranchs veliger larvae, which with few exceptions are planktotrophic . The three bands of compound cilia on the early larva of the scaphopod Dentalium (Antalis) have the cell-lineage of a prototroch, so the very similar ciliary bands on the larval serosa of the protobranch Acila is very probably a prototroch too .
The prototrochs of the molluscs with ciliated larvae or embryos all have the same cell-lineage and structure as those of all the other spiralians, so the homology of these ciliary bands can hardly be questioned. Further, it seems most likely that feeding veliger larvae are ancestral in Gastropoda and Autobranchia, but the ancestral larval type of the molluscs cannot be deduced directly.
Bryozoans all have indirect development. The planktotrophic cyphonautes larva is found in basal lineages of the Eurystomata [104, 105], and the fossil record indicates that the Stenolaemata (with the Living Cyclostomata) is an ingroup of the Eurystomata [106, 107]; so the cyphonautes may well have been the ancestral larval type. The corona of the lecithotrophic larvae could be a modified prototroch, but the bryozoans do not show spiral cleavage. The origin of the ciliated ridge, with a ciliary sieving system on multiciliate cells similar to that on the tentacles of the polypides , is enigmatic. The particle capture mechanism has earlier been thought to be similar to that of the echinoderm larvae, i.e. an upstream system with local ciliary reversal, but new observations have shown that the particles are captured by the laterofrontal cilia, which may function as a sieve and make flicking movements [109–111].
Almost all phoronids and the linguliform brachiopods have indirect development with feeding “larvae”. The planktonic linguliform larvae are swimming juveniles, essentially having the anatomy of the benthic adults with ciliated tentacles having a ciliary sieving system on monociliate cells. Particles become captured by laterofrontal cilia which either make a flicking movement or elicit a tentacle flick, in both cases moving the particle closer to the water current towards the mouth [112, 113]. The actinotrocha larvae of the phoronids has tentacles of the same structure and function as those of the brachiopods, and the larval tentacles are retained as adult tentacles in some species [112, 114]. The origin of this ciliary feeding mechanism has not been elucidated.
Several studies have concluded that the feeding dipleurula is the ancestral larval type of echinoderms and enteropneusts (Ambulacraria) [115, 116] (Figure 10). The planktotrophic larvae have a circumoral ciliary band (neotroch) of a unique structure and function: the band consists of monociliary cells performing upstream-collecting of particles based on ciliary reversal .
The radiation of the living echinoderm classes now seems well understood with Crinoidea as the sister group of the remaining classes (Eleutrerozoa) . Feeding dipleurula larvae of various shapes are known from all the eleutherozoan classes (Figure 10). Feeding larvae have not been reported from any crinoid, but the sea lily Metacrinus has a lecithotrophic larva with a neotroch in the same shape as that of many of the early larval stages of the eleutherozoans; this ciliary band becomes reorganized into four circular bands through a process which is very similar to that observed in the initially planktotrophic larva of the holothurians Synapta and Stichopus[119, 120]. Several studies of developmental types of smaller lineages demonstrate that lecithotrophic or direct development has evolved independently many times , for example in the echinoids  and in the family Asterinidae [123, 124]. An evolution of a planktotrophic larval type from a non-feeding type has never been observed. This is in full agreement with the information from the fossil record mentioned above.
The neotroch of feeding enteropneust tornaria larvae is of the simple shape of a dipleurula in the early larvae, but becomes highly complicated during development in some species, especially in the Ptychoderidae. It is the first ciliary band to develop at the young larvae, and is initially used both in particle collection and swimming. The large perianal ring of compound cilia, which is the only ciliary band of the direct developing larvae, develops a little later .
Thus, there are many well-documented examples of evolution of non-planktotrophic development (lecithotrophic or direct) in all the phyla where ciliated planktotrophic larvae occur. The intercalation theory implies hundreds of examples of parallel evolution of planktotrophic trochophora larvae from non-feeding larvae, but no example of evolution from “direct development” to development with planktotrophic larvae. So, the tendencies are clearly in favor if the terminal addition theory.
The apical organ: The ancestral eumetazoan (neuralian) brain?
Almost all pelagic ciliated eumetazoan (neuralian) larvae have a group of nerve cells with long cilia at the apical pole. This organ has traditionally been called the apical organ, and this is unambiguous in cnidarian and ambulacrarian larvae. Unfortunately, the homologous organ in spiralian larvae is in many species intimately connected with a pair of lateral ganglia to form a compound organ which has also been called an apical organ. To avoid confusion, I have in previously tried to introduce the name “apical ganglion” for the organ [22, 126, 127], but it is not a real ganglion, and it appears that almost all recent papers use the term apical organ in the strict sense, so I have decided to revert to the old practice, following the recommendations of . But it must be remembered that almost all older papers use the term for the compound organ.
The homology of cnidarian and bilaterian apical organs have been questioned, especially because the apical-blastoporal axis and the animal-vegetal axis have the same orientation in the bilaterians, but opposite orientations in the cnidarians, i.e., the polar bodies are situated at the apical pole in bilaterians but at the blastoporal pole in cnidarians. However, it now appears that gene expression supports the homology both of the apical organs and of the gastrulation areas and that the position of the polar bodies (and thus of the an-veg axis) may have changed in the bilaterians .
An apical organ is found in almost all cnidarian larvae. It comprises flask-shaped sensory cells and degenerates when the larva settles with the apical pole , in some species through apoptosis (personal communication from Dr Heather Marlow, EMBL Heidelberg).
Ciliated spiralian larvae almost all have an apical organ, with the cerebral ganglia developing almost simultaneously, often in close apposition to the apical organ. A close connection between their cerebral commissure and neurites from the basal parts of the apical cells are usually found. The apical organ degenerates before or at metamorphosis in all species [75, 101, 131], in some species through apoptosis .
Among the ambulacrarians, the enteropneust tornaria larvae have a conspicuous apical organ, which degenerates after metamorphosis . Echinoderm larvae show considerable variation in the nervous organs at the apical pole. The early larvae of the eleutherozoan classes develop a small group of serotonergic sensory cells in more or less close contact with the apical loops of the ciliary band (neotroch); their homology with other apical organs appears uncertain . The organ is apparently lost together with the ciliary bands at metamorphosis. The crinoid larvae develop a conspicuous ciliary tuft, but the organ resembles those of the eleutherozoan larvae, and the whole larval nervous system is lost at metamorphosis .
It appears that the apical organs are associated with the pelagic part of the life cycles and that they always disappear before or at metamorphosis. Thus, it fits well with the terminal addition theory, which proposes a planktonic gastraea with an apical organ as the ancestor of the eumetazoans (neuralians) . There seems to be no indication of the existence of an apical organ in a direct developing ancestor, and a convergent evolution in many eumetazoan lineages appears highly unlikely.
Information about the genes involved in the organization of larval ciliary feeding bands would be of great importance for the understanding of their evolution. Are the same genes responsible for example for the development of the neotroch of all dipleurula larvae, and could a silencing of one or more of these genes lead to the uniformly ciliated, lecithotrophic larvae seen in several species? Unfortunately, there are only very few studies of this type. Comparisons of gene expressions in trochophora and tornaria larvae are of questionable value because of the possibility of homoplasy/homocracy [2, 5, 134].
The only comparative studies of ciliated larvae of closely related species with different life cycles appears to be observations on the larval stages of the indirectly developing echinoid Heliocidaris tuberculata with a normal echinopluteus larva and the direct developing H. erythrogramma and Pseudoboleta maculata, which have ovoid, uniformly ciliated larvae without a functioning gut. Fertilizing of eggs of H. erythrogramma with sperm from the about 4-million years distant H. tuberculata resulted in short-armed, pluteus-type planktotrophic larvae which went through a normal metamorphosis [135, 136]. Experiments with fertilizing eggs of H. erythrogramma with sperm from the about 40-million years distant P. maculata resulted in very similar larvae, and it was concluded that their ancestral common species had indirect development with an echinopluteus larva . This could indicate that the gene(s) governing the development of the pluteus arms and the larval gut are silenced in the direct developing species but can be partially activated by genes from the sperm of the indirect developing species (as in the ascidians, see below).
The later study of gene expression in gastrula and early pluteus stages of H. tuberculata and a stage of H. erythrogramma with developing primary tube feet  compares so disparate developmental stages that it must be considered as uninformative.
Observations on development of ascidians have shown that tailless (anuran) larvae have evolved several times within Molgula and Pelonaia and that absence of Manx expression results in the anuran development . This is clearly an example of a gene which regulates a switch between elongation and non-elongation of the cell groups which form the tail but which also later on develop into the characteristic chordate structures.
More circumstantial evidence comes from studies of poecilogony, i.e. the presence of different developmental types in the same species, for example in Annelida and Mollusca. In the annelid family Spionidae, Streblospio benedicti two morphs are found one of which deposits small eggs developing into planktotrophic trochophores, whereas the other morph deposits large eggs developing into lecithotrophic (or facultatively planktotrophic) larvae. Boccardia proboscidea deposits egg masses with each egg capsule containing many eggs, some of which develop into larvae which hatch as planktotrophic larvae, whereas other embryos feed on nurse eggs and hatch as advanced larvae or small juveniles. The intracapsular trochophora larvae are apparently morphologically differentiated to the stage where feeding of the yolk granules should be possible, but feeding was not observed. A similar type of development is found in Pygospio elegans (Figure 11). It must be assumed that the fertilized eggs all contain the genetic information needed for the organization of a feeding trochophore, with only a small genetic switch deciding whether this program or the abbreviated program for direct development becomes activated.
Similar developmental variation is found in the gastropod Alderia, where A. modesta shows only planktotrophic development, whereas A. willowi shows poecilogony; in some cases, the same individual was observed to deposit only egg masses with embryos hatching as lecithotrophic larvae just after collection, but after 20 days in captivity, 60% of the larvae from an egg mass were planktotrophic .
The occurrence of Hox genes may also indicate that the ancestral eumetazoan was a radial (or only slightly bilateral) gastrula. Cnidarians and (ctenophores) lack the long bilaterian Hox cluster. In the protostomes, Hox gene expression is documented in detail in the annelid Nereis, where Hox genes are not expressed in the prostomium and peristomium . A similar expression pattern is seen in the gastropod Haliotis. In the Arthropoda, Hox gene expression is similarly absent in the development of the supposedly homologous ocular and antennal/cheliceral segments . This could indicate that a more radial-type larva was ancestral and that the bilateral elongation of the body with the collateral Hox cluster is a later addition related to the shift from an ancestrally radial pelagic ancestor to a bilateral organism with a benthic adult life style.
The diagram showing “progressive evolutionary interpolation of larval development …”  (Figure 4; reproduced in several later publications) is pure speculation without any basis in direct observations or considerations about adaptation. These scattered observations all indicate that the eumetazoan ancestor had indirect development with a planktotrophic larva.
Scenarios: Functional morphology and evolution
It goes without saying that evolution is the result of descent with modification and natural selection. This implies that all organisms/organs/structures have evolved continuously through small steps, with each new step giving some advantage. Non-adaptive modifications will be selected against, and proposed evolutionary series where only the end point is functional/advantageous must be rejected as orthogenesis . Accordingly, all scenarios must be checked for two properties: 1) Have all the proposed ancestors and the stages between them and their descendants been able to feed, move and reproduce, and 2) Did each small step in the proposed evolution confer an advantage, so that it could be selected for. In this section, I will discuss the scenarios implied in the two main theories for the evolution of the eumetazoan life cycles with these basal principles in mind.
The basal part of the metazoan tree is still discussed, but the Eumetazoa clearly comprise Cnidaria and Bilateria and the Bilateria comprise Protostomia and Deuterostomia [22, 148]. The positions of Ctenophora and Acoelomorpha are uncertain, but they will not be discussed here.
The terminal addition theory proposes that the eumetazoan ancestor was a holopelagic feeding gastraea and that a benthic stage was added to the life cycles in various lineages.
The evolution of the cnidarians from a holopelagic gastraea was a simple addition of a sessile adult stage, probably facilitated by the evolution of nematocysts. All anthozoans and most medusozoans have indirect development and planktotrophic gastrula larva are found in several anthozoans. The ancestral life cycle was most likely indirect with a feeding larva.
The trochaea-theory for the evolution of the protostomes (Figure 12), in particular of the spiralians, from the gastraea has been discussed in detail elsewhere . It can be summarized in a number of steps: 1) The eumetazoan (neuralian) ancestor was a gastraea which developed a circumblastoporal ring of locomotory cilia which became specialized as compound cilia functioning as a downstream-collecting system (the archaeotroch) in contact with a circumblastoporal nerve; this was now a trochaea (Figure 12, upper left). The posterior position of the archaeotroch maximizes the efficiency of the ciliary beat  and corresponds to the position of the ring of compound cilia at the posterior pole of the (non-feeding) larvae some of demosponges . A small apical organ was connected to the circumblastoporal nerve ring and probably regulated the beat of the archaeotroch. 2) An adult benthic stage was added and lost the compound cilia because the animal began creeping and feeding on deposited material. The ciliary field around the blastopore was used for transporting sediment particles to the gut (as in the gastraea/trochaea). The apical organ of the creeping adult moved towards a new anterior pole, and lateral blastopore closure created a through gut with anterior mouth and posterior anus (amphistomy) (Figure 12, lower left). 3) The lateral blastopore closure became permanent already in the larva (adultation ), and the archaeotroch became divided into an anterior, perioral part and a posterior, perianal ring (telotroch). The anterior ring expanded in a pair of elongate lateral loops with an anterior (prototroch) and posterior (metatroch) part. This was now a trochophora larva (Figure 12, upper right). 4) The apical organ of the trochaea was lost in the adult, whereas the periblastoporal nerve became differentiated into an oral loop (with an anterior part becoming incorporated in the brain), a pair of nerve cords along the fused blastopore lips, and a small perianal loop. A pair of cerebral ganglia differentiated from areas lateral to the apical organ and became the main part of the adult brain (Figure 12, lower right). These proposed evolutionary steps are all gradual and each step appears to provide some advantage.
No reasonable scenario has been proposed for the evolution of phoronids, brachiopods and bryozoans. Ecdysozoans lack ciliated outer epithelia and primary larvae and are obviously descended from a spiralian stem lineage with ciliated epithelia .
There seems to be no scenario for the origin of the deuterostomes, but it seems undisputed that the ancestral ambulacrarian had indirect development with a dipleurula larva . The ancestral cephalochordate probably had a ciliated feeding larva, but the life cycle of the ancestral “olfactor” (the latest common ancestor of urochordates and vertebrates) remains obscure.
The intercalation theories propose that the planktotrophic larvae are stages intercalated into an ancestral direct development. Several variations of this idea have been proposed for more than a century. The planuloid-acoeloid theory , which derives the bilaterians from a non-feeding planuloid ancestor via a compact acoel-like form, was forcefully advocated by  and followed more or less tacitly in many textbooks. In the original form of the intercalation theory the proposed ancestor, the planula, had no gut and could therefore probably not feed; all non-feeding planula larvae develop from eggs with much yolk, and no adult free-living organisms of this organization is known. However, most recent proponents of this theory now agree that ancestor had a sack-shaped gut (and was therefore a gastraea) [5, 10, 153]. So the difference between the two theories is more about the life style of the ancestor. The terminal addition theory proposes a pelagic, planktotrophic gastrula and the intercalation theories a benthic, deposit-feeding, possibly bilateral ancestor (Figure 1).
There are only few attempts to visualize the intercalation theory for the bilaterians. Evolution of a pelagic larva from the benthic juvenile has been proposed as an adaptation to enhance dispersal, which appears reasonable. The evolution of a ring of compound cilia either at an anterior or a posterior ridge, as that also seen in some sponge larvae, enhances swimming , and this explanation is common to both the terminal addition and the intercalation theories. In the intercalation theories, the larva could be a lecithotrophic trochophore with only a prototroch or a metatroch.
For the spiralians, most of the intercalation theories propose that the planktotrophic trochophora larvae evolved many times by specializations of an ancestral uniformly ciliated non-feeding planula through a larva with a prototroch to the feeding trochophore. The diagram of  illustrates one version of this idea (Figure 13). The specializations of the ciliation in steps A-D, with the establishment of a prototroch, could be an adaptation to more powerful swimming, and the development of the mouth (and anus?) already in the larva could be a simple expression of adult characters already in the larva. However, evolution of a metatroch with the ciliary beat opposing that of the prototroch would hamper swimming and appears highly improbable. The whole evolution of the downstream-collecting system (Figure 13 D-E) appears as an example of orthogenesis because the structure will not be functional until fully formed. Hejnol A, 2007, Henry JQ, 2007 [11, 12] suggested that the metatroch evolved through co-option of the posterior row of cells of the prototroch. However, the origin of a band of compound cilia with a beat opposite that of the prototroch through a split from the prototroch appears highly unlikely for two reasons: 1) During the evolution, the two bands would have been beating towards each other, and this can have no adaptive value before the whole downstream-collecting system has become functioning. 2) The origin of the metatroch through a split of the prototroch would imply a reversal of the beat in the metatroch, and ciliary reversals have never been observed in bands of compound cilia. The origin of the secondary trochoblasts and the metatroch from cells of the second micromere quartet around the blastopore is an integral part of the trochaea theory. I do not know any scenario for the origin of the pelago-benthic life cycle of the ambulacrarians.
It appears that only the terminal addition theory provides scenarios explaining the origin of the indirect life cycles with planktotrophic larvae which are in accordance with the principles of evolution through natural selection and adaptation.
The fossil record contains no information about the type of life cycle of the Precambrian eubilaterians. Some Early Cambrian fossils demonstrate the presence of planktotrophic larvae in molluscs and brachiopods. A few studies of evolution in lineages of gastropods and echinoderms demonstrate multiple origin of non-planktotrophic development in clades with planktotrophic larvae, but there seems to be no example of an evolution in the opposite direction. Studies of the development of Living species shows good examples of multiple evolution of non-planktotrophic development in groups with predominantly planktotrophic development, but the picture is not unambiguous. Many papers simply conclude that the planktotrophic larvae occur so scattered in the metazoans that multiple, convergent evolution seems probable. The few cladistic analyses suffer from the misconception that a gain of a complicated ciliary feeding structure is of the same weight as a loss of the structure. There seems to bee no direct study of the genetic information involved, but the elegant studies of the evolution of tailless (anuran) larvae of ascidians demonstrate that the silencing of a single gene is responsible for the loss of the elongation of the tissues of the tail. However, the differentiation of the tissues characteristic of the chordates evolved in the chordate ancestors and has been retained in the anuran larvae.
The modern version of the intercalation theory proposes a gastrula stage in the ancestral eumetazoan, so both this and the terminal-addition theory can accommodate the cnidarians which added a sessile stage to the planktonic stage. The ancestral bilaterian was probably a gastraea too, the difference between the two theories being whether the gastraea was pelagic and planktotrophic (terminal addition theory) or benthic and deposit-feeding (intercalation theory).
The terminal addition theory scenarios explain the life cycles of most protostome phyla, but provide no scenario for the deuterostomes. The trochaea theory for the origin of the spiralians is in full accordance with the Darwinian principle of evolution through gradualism and adaptation. It is in good accordance with the many examples of evolution of non-planktotrophic development within smaller clades which ancestrally have life cycles with planktotrophic larvae. The planktotrophic larvae have been modified in many fascinating ways in the various lineages, and lecithotrophic larvae or direct development has evolved in many other lineages. The speciation event which lead towards lecithotrophy or direct development in one of the two sister species may have happened quite recently, so that species pairs with one species with indirect and one (or a few) with direct development are now seen. More ancient speciation events produced ancestors of larger clades with direct development, from genera or families all the way to the largest clades of the animal kingdom, such as Ecdysozoa and Chordata (Figure 14). It appears that planktotrophy can be regained after a period if the genes organizing the feeding structures have been retained. However, non-functioning genes are probably only retained for shorter periods, so re-evolution of feeding structures are only likely to happen after shorter evolutionary periods of non-feeding .
The intercalation theory provides no adaptation-based scenario for the origin of the planktotrophic larvae.
It can only be concluded that the ancestral eumetazoan/neuralian was a holopelagic, planktotrophic gastraea and that indirect (pelago-benthic) life cycles evolved in a few lineages through terminal addition of adult stages with the planktotrophic stages retained as larvae. In the cnidarians, the benthic stage was sessile, whereas the benthic stage in the bilaterians was vagile/creeping. It remains uncertain whether the vagile/creeing stage evolved in the last common ancestor of all bilaterians or separately in Protostomia and Deuterostomia. Non-feeding larvae and direct development developed in many clades (Figure 14). This implies that the larval types are important phylogenetic markers and not just isolated specializations with numerous complex homoplasies.
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Nielsen, C. Life cycle evolution: was the eumetazoan ancestor a holopelagic, planktotrophic gastraea?. BMC Evol Biol 13, 171 (2013). https://doi.org/10.1186/1471-2148-13-171