Table 1 List of DXR-II and DLO related sequences examined in this study
| Â | Bacterial strain | UID | GenBank and RefSeq | Â | Bacterial strain | UID | GenBank and RefSeq |
|---|---|---|---|---|---|---|---|
DXR-II | Anaerococcus prevotii DSM 20548 | 59219 | gi|257066990|ref|YP_003153246.1 | DLO1 | Frankia sp. EuI1c | 42615 | gi|312199021|ref|YP_004019082.1 |
Bacillus clausii KSM-K16 | 58237 | gi|56965002|ref|YP_176733.1 | Gloeobacter violaceus PCC 7421 | 58011 | gi|37521773|ref|NP_925150.1 | ||
Bacillus halodurans C-125 | 57791 | gi|15613337|ref|NP_241640.1 | Hirschia baltica ATCC 49814 | 59365 | gi|254294497|ref|YP_003060520.1 | ||
Bacillus pumilus SAFR-032 | 59017 | gi|157692210|ref|YP_001486672.1 | Kineococcus radiotolerans SRS30216 | 58067 | gi|152964541|ref|YP_001360325.1 | ||
Bartonella bacilliformis KC583 | 58533 | gi|121601844|ref|YP_989368.1 | Methanosphaerula palustris E1-9c | 59193 | gi|219852978|ref|YP_002467410.1 | ||
Bartonella clarridgeiae 73 | 62131 | gi|319898668|ref|YP_004158761.1 | Nakamurella multipartita DSM 44233 | 59221 | gi|258653356|ref|YP_003202512.1 | ||
Bartonella grahamii as4aup | 59405 | gi|240851045|ref|YP_002972445.1 | Nostoc azollae 0708 | 49725 | gi|298491811|ref|YP_003721988.1 | ||
Bartonella henselae str. Houston-1 | 57745 | gi|49475991|ref|YP_034032.1 | Nostoc punctiforme PCC 73102 | 57767 | gi|186681545|ref|YP_001864741.1 | ||
Bartonella quintana str. Toulouse | 57635 | gi|49474558|ref|YP_032600.1 | Nostoc sp. PCC 7120 | 57803 | gi|17230323|ref|NP_486871.1 | ||
Bartonella tribocorum CIP 105476 | 59129 | gi|163868831|ref|YP_001610057.1 | Pseudomonas stutzeri A1501 | 58641 | gi|146282531|ref|YP_001172684.1 | ||
Brucella abortus bv. 1 str. 9-941 | 58019 | gi|62317206|ref|YP_223059.1 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 | 68749 | gi|339494143|ref|YP_004714436.1 | ||
Brucella abortus S19 | 58873 | gi|189022468|ref|YP_001932209.1 | Pseudoxanthomonas spadix BD-a59 | 75113 | gi|357416048|ref|YP_004929068.1 | ||
Brucella canis ATCC 23365 | 59009 | gi|161621022|ref|YP_001594908.1 | Ramlibacter tataouinensis TTB310 | 68279 | gi|337280130|ref|YP_004619602.1 | ||
Brucella melitensis ATCC 23457 | 59241 | gi|225686729|ref|YP_002734701.1 | Rhodobacter sphaeroides 2.4.1 | 57653 | gi|77463590|ref|YP_353094.1 | ||
Brucella melitensis biovar Abortus 2308 | 62937 | gi|83269188|ref|YP_418479.1 | Rhodobacter sphaeroides ATCC 17025 | 58451 | gi|146278215|ref|YP_001168374.1 | ||
Brucella melitensis bv. 1 str. 16Â M | 57735 | gi|17988671|ref|NP_541304.1 | Rhodobacter sphaeroides ATCC 17029 | 58449 | gi|126462422|ref|YP_001043536.1 | ||
Brucella microti CCM 4915 | 59319 | gi|256015731|ref|YP_003105740.1 | Rhodobacter sphaeroides KD131 | 59277 | gi|221639432|ref|YP_002525694.1 | ||
Brucella ovis ATCC 25840 | 58113 | gi|148558391|ref|YP_001257886.1 | Rhodothermus marinus DSM 4252 | 41729 | gi|268316714|ref|YP_003290433.1 | ||
Brucella pinnipedialis B2/94 | 71131 | gi|340792737|ref|YP_004758201.1 | Rhodothermus marinus SG0.5JP17-172 | 72767 | gi|345303494|ref|YP_004825396.1 | ||
Brucella suis 1330 | 57927 | gi|23500696|ref|NP_700136.1 | Sphingomonas wittichii RW1 | 58691 | gi|148557435|ref|YP_001265017.1 | ||
Brucella suis ATCC 23445 | 59015 | gi|163845083|ref|YP_001622738.1 | Streptomyces griseus subsp. griseus NBRC 13350 | 58983 | gi|182439707|ref|YP_001827426.1 | ||
Chelativorans sp. BNC1 | 58069 | gi|110636013|ref|YP_676221.1 | Xanthomonas campestris pv. campestris str. 8004 | 57595 | gi|77761197|ref|YP_243248.2 | ||
Chloroflexus aurantiacus J-10-fl | 57657 | gi|163846900|ref|YP_001634944.1 | Xanthomonas campestris pv. campestris str. ATCC 33913 | 57887 | gi|77747863|ref|NP_637377.2 | ||
Chloroflexus sp. Y-400-fl | 59085 | gi|222524722|ref|YP_002569193.1 | Xanthomonas campestris pv. campestris str. B100 | 61643 | gi|188991706|ref|YP_001903716.1 | ||
Clostridium difficile 630 | 57679 | gi|126700028|ref|YP_001088925.1 | DLO2 | Achromobacter xylosoxidans A8 | 59899 | gi|311109080|ref|YP_003981933.1 | |
Clostridium difficile CD196 | 41017 | gi|260683992|ref|YP_003215277.1 | Acidiphilium cryptum JF-5 | 58447 | gi|148260557|ref|YP_001234684.1 | ||
Clostridium difficile R20291 | 40921 | gi|260687652|ref|YP_003218786.1 | Acidiphilium multivorum | 63345 | gi|326403752|ref|YP_004283834.1 | ||
Eubacterium limosum KIST612 | 59777 | gi|310828050|ref|YP_003960407.1 | Acidovorax ebreus TPSY | 59233 | gi|222110742|ref|YP_002553006.1 | ||
Finegoldia magna ATCC 29328 | 58867 | gi|169824217|ref|YP_001691828.1 | Acidovorax sp. JS42 | 58427 | gi|121594656|ref|YP_986552.1 | ||
Halanaerobium hydrogeniformans | 60191 | gi|312144614|ref|YP_003996060.1 | Actinosynnema mirum DSM 43827 | 58951 | gi|256377798|ref|YP_003101458.1 | ||
Listeria innocua Clip11262 | 61567 | gi|16799625|ref|NP_469893.1 | Agrobacterium sp. H13-3 | 63403 | gi|332715931|ref|YP_004443397.1 | ||
Listeria ivanovii | 73473 | gi|347547952|ref|YP_004854280.1 | Agrobacterium tumefaciens str. C58 | 57865 | gi|15891768|ref|NP_357440.1 | ||
Listeria monocytogenes | 43671 | gi|284800826|ref|YP_003412691.1 | Anaeromyxobacter sp. Fw109-5 | 58755 | gi|153005951|ref|YP_001380276.1 | ||
Listeria monocytogenes 08-5923 | 43727 | gi|284994012|ref|YP_003415780.1 | Arthrobacter sp. FB24 | 58141 | gi|116672147|ref|YP_833080.1 | ||
Listeria monocytogenes EGD-e | 61583 | gi|16802589|ref|NP_464074.1 | Azorhizobium caulinodans ORS 571 | 58905 | gi|158423518|ref|YP_001524810.1 | ||
Listeria monocytogenes HCC23 | 59203 | gi|217965360|ref|YP_002351038.1 | Bordetella avium 197Â N | 61563 | gi|187476836|ref|YP_784860.1 | ||
Listeria monocytogenes serotype 4b str. CLIP 80459 | 59317 | gi|226223175|ref|YP_002757282.1 | Bordetella bronchiseptica RB50 | 57613 | gi|33599421|ref|NP_886981.1 | ||
Listeria monocytogenes serotype 4b str. F2365 | 57689 | gi|46906791|ref|YP_013180.1 | Bordetella parapertussis 12822 | 57615 | gi|33595139|ref|NP_882782.1 | ||
Listeria welshimeri serovar 6b str. SLCC5334 | 61605 | gi|116871936|ref|YP_848717.1 | Bordetella petrii DSM 12804 | 61631 | gi|163858833|ref|YP_001633131.1 | ||
Mesorhizobium ciceri biovar biserrulae WSM1271 | 62101 | gi|319781195|ref|YP_004140671.1 | Bradyrhizobium japonicum USDA 110 | 57599 | gi|27382926|ref|NP_774455.1 | ||
Mesorhizobium loti MAFF303099 (1) | 57601 | gi|13473132|ref|NP_104699.1 | Bradyrhizobium sp. BTAi1 | 58505 | gi|148252763|ref|YP_001237348.1 | ||
Mesorhizobium loti MAFF303099 (2) | 57601 | gi|13475431|ref|NP_106995.1 | Bradyrhizobium sp. ORS278 | 58941 | gi|146343223|ref|YP_001208271.1 | ||
Mesorhizobium opportunistum WSM2075 | 40861 | gi|337266026|ref|YP_004610081.1 | Candidatus Pelagibacter ubique HTCC1062 | 58401 | gi|71083552|ref|YP_266271.1 | ||
Ochrobactrum anthropi ATCC 49188 (1) | 58921 | gi|153008718|ref|YP_001369933.1 | Cupriavidus necator N-1 | 68689 | gi|339328796|ref|YP_004688488.1 | ||
Ochrobactrum anthropi ATCC 49188 (2) | 58921 | gi|153011435|ref|YP_001372649.1 | Cupriavidus taiwanensis | 61615 | gi|194292943|ref|YP_002008850.1 | ||
Pelagibacterium halotolerans B2 | 74393 | gi|357386128|ref|YP_004900852.1 | Methylibium petroleiphilum PM1 | 58085 | gi|124268433|ref|YP_001022437.1 | ||
Roseobacter litoralis Och 149 | 54719 | gi|339504759|ref|YP_004692179.1 | Methylobacterium nodulans ORS 2060 | 59023 | gi|220926646|ref|YP_002501948.1 | ||
Sebaldella termitidis ATCC 33386 | 41865 | gi|269122365|ref|YP_003310542.1 | Methylobacterium radiotolerans JCM 2831 | 58845 | gi|170751253|ref|YP_001757513.1 | ||
Sinorhizobium fredii NGR234 | 59081 | gi|227820170|ref|YP_002824141.1 | Methylobacterium sp. 4-46 | 58843 | gi|170738904|ref|YP_001767559.1 | ||
Starkeya novella DSM 506 | 48815 | gi|298294348|ref|YP_003696287.1 | Mycobacterium smegmatis str. MC2 155 | 57701 | gi|118472915|ref|YP_885297.1 | ||
Tepidanaerobacter sp. Re1 | 66873 | gi|332798945|ref|YP_004460444.1 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 | 49483 | gi|297561288|ref|YP_003680262.1 | ||
Thermosediminibacter oceani DSM 16646 | 51421 | gi|302389988|ref|YP_003825809.1 | Paracoccus denitrificans PD1222 | 58187 | gi|119386102|ref|YP_917157.1 | ||
Verminephrobacter eiseniae EF01-2 | 58675 | gi|121609190|ref|YP_996997.1 | Polaromonas sp. JS666 | 58207 | gi|91787595|ref|YP_548547.1 | ||
DLO1 | Anabaena variabilis ATCC 29413 | 58043 | gi|75907337|ref|YP_321633.1 | Polymorphum gilvum SL003B-26A1 | 65447 | gi|328544682|ref|YP_004304791.1 | |
Chloroflexus aggregans DSM 9485 | 58621 | gi|219849032|ref|YP_002463465.1 | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 | 58611 | gi|145589731|ref|YP_001156328.1 | ||
Coraliomargarita akajimensis DSM 45221 | 47079 | gi|294053940|ref|YP_003547598.1 | Pusillimonas sp. T7-7 | 66391 | gi|332284324|ref|YP_004416235.1 | ||
Coxiella burnetii CbuG_Q212 | 58893 | gi|212211864|ref|YP_002302800.1 | Rhodopseudomonas palustris BisB5 | 58441 | gi|91978550|ref|YP_571209.1 | ||
Coxiella burnetii CbuK_Q154 | 58895 | gi|212217809|ref|YP_002304596.1 | Rhodospirillum rubrum ATCC 11170 | 57655 | gi|83594471|ref|YP_428223.1 | ||
Coxiella burnetii Dugway 5Â J108-111 | 58629 | gi|154707185|ref|YP_001423500.1 | Spirochaeta smaragdinae DSM 11293 | 51369 | gi|302337774|ref|YP_003802980.1 | ||
Coxiella burnetii RSA 331 | 58637 | gi|161830312|ref|YP_001597660.1 | Spirochaeta sp. Buddy | 63633 | gi|325972507|ref|YP_004248698.1 | ||
Coxiella burnetii RSA 493 | 57631 | gi|29655123|ref|NP_820815.1 | Streptomyces flavogriseus ATCC 33331 | 40839 | gi|357414986|ref|YP_004926722.1 | ||
Cyanothece sp. PCC 7425 | 59435 | gi|220910534|ref|YP_002485845.1 | Streptomyces sp. SirexAAcpoE | 72627 | gi|345003166|ref|YP_004806020.1 | ||
Cyclobacterium marinum DSM 745 | 71485 | gi|343084038|ref|YP_004773333.1 | Variovorax paradoxus EPS | 62107 | gi|319794630|ref|YP_004156270.1 | ||
Deinococcus maricopensis DSM 21211 | 62225 | gi|320332781|ref|YP_004169492.1 | Variovorax paradoxus S110 | 59437 | gi|239816446|ref|YP_002945356.1 | ||
Desulfococcus oleovorans Hxd3 | 58777 | gi|158521221|ref|YP_001529091.1 | Xanthobacter autotrophicus Py2 | 58453 | gi|154244830|ref|YP_001415788.1 |