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Table 1 Allelic profiles of Wolbachia genes in the five w Pip groups

From: Population structure of Wolbachia and cytoplasmic introgression in a complex of mosquito species

wPip group

wPip Haplotypes

n

wPip Haplotypes

Population numbers

   

ank2

pk1

GP15

MutL

RepA

 

wPip-I

 

wPip-I known haplotypes

821

a

a

a

a

a,b

1-45 /57-63/ 66-71/ 74-75/ 77-78/ 105/ 108-114/ 119- 120/ 123-124/ 129/ 146/ 162-165/ 167-168/ 175-176

 

#1

1

d

a

a

a

a

61

 

#2

1

b

a

ND

ND

ND

167

wPip-II

 

wPip-II known haplotypes

276

e

c

b,e,f

b,c,d

a

64/ 160-107/ 115-117/ 121-122/ 130-132/ 137-145/ 147/ 152-155/ 157/ 159-160/ 165-167/ 179-182

 

#3

1

a

c

j*

c

b

167

 

#4

1

a

c

f

-

a

152

 

#5

2

a

c

b

c

a

140/156

 

#6

3

a

c

b

b

a

142

 

#7

3

b

c

c

ND

b

147/159

 

#8

1

b

c

c

e

b

157

 

#9

3

b

c

ND

c

b

182

 

#10

9

b

c

ND

ND

b

178/179/180

 

#11

4

b

c

h*

c

a

178

 

#12

3

b

c

i*

b

b

167

 

#13

1

b

c

k*

c

a

179

 

#14

7

b

c

h*

c

ND

106/179

 

#15

1

b

c

c

-

b

147

 

#16

10

b

c

k

c

-

107

 

#17

1

c

c

d

-

a

157

wPip-III

 

wPip-III known haplotypes

401

b

b

c

b,e

b

18/ 72-76/ 78-89/ 92-94/ 96-99/ 131/ 134/ 136/ 140/ 144-145/ 148-152/ 154-156/ 158-161/ 165-167/ 179/ 182

 

#18

1

a

b

-

-

-

81

 

#19

1

c

b

-

-

b

85

 

#20

6

d

b

c

b

b

73

 

#21

1

e

b

c

-

b

129

 

#22

1

e

b

l*

ND

a

156

 

#23

1

e

b

ND

ND

ND

131

 

#24

1

e

b

f

c

a

157

 

#25

1

e

b

c

e

b

140

wPip-IV

 

wPip-IV known haplotype

260

c

d

d

c

a

51/ 90/ 100-104/ 118/ 121/ 125-129/ 131/ 133/ 135/ 169-174

 

#26

1

e

d

d

-

a

129

wPip-V

 

wPip-V known haplotype

78

d

e

g

f

a

45-50/ 54/ 65/ 100/ 106

 

#27

19

a

e

g

c

a

52/53

 

#28

11

b

e

g

a

a

90

undetermined

        
 

#29

2

b

a

c

c

b

167

  1. New wPip haplotypes are identified by #number. Allelic profiles for GP15, MutL and RepA loci were determined for all new wPip haplotypes and for a subsample of specimens for the known wPip haplotypes. ND, allele not determined (DNA shortage); Dash, null allele (no PCR product); Asterisk, new allele.