Skip to main content

Table 2 List of top ranked CNVs (gene overlap using 10 kb flanks) for population differentiation (at 1% significance level, see Methods for cutoff values in three population pairs)

From: Impact of constitutional copy number variants on biological pathway evolution

CNV

Overlapping genes

F-stat

Pairs

CNVR2664.1

ADRA1B

0.53; 0.67

CEU-YRI; YRI_ASN

CNVR3865.1

IKBKB1,POLB

0.53; 0.57

CEU-YRI; YRI-ASN

CNVR1543.1

CPNE4

0.52; 0.37

YRI-ASN; CEU-YRI

CNVR1708.1

TFRC

0.47; 0.37

YRI-ASN; CEU-ASN

CNVR371.1

YY1AP1,DAP3

0.47; 0.37

CEU-YRI; YRI-ASN

CNVR2217.1

PDLIM31

0.47; 0.32

CEU-YRI; YRI-ASN

CNVR544.1

SLC35F32

0.46; 0.72

CEU-ASN; YRI-ASN

CNVR1648.3

KCNMB2

0.41; 0.77

CEU-YRI; YRI-ASN

CNVR6782.1

CNTNAP4

0.41; 0.31

YRI-ASN; CEU-YRI

CNVR7114.8

KIAA1267

0.4; 0.3

CEU-YRI; CEU-ASN

CNVR995.1

TUBA3D

0.39; 0.37

CEU-YRI; YRI-ASN

CNVR8147.1

HMGXB4

0.39; 0.36

CEU-YRI; YRI-ASN

CNVR1373.1

PRSS45

0.37; 0.31

CEU-YRI; YRI-ASN

CNVR3347.1

BBS9

0.35; 0.35

CEU-ASN; YRI-ASN

CNVR2152.1

TLL1

0.32; 0.34

CEU-YRI; YRI-ASN

CNVR4440.1

TXN

0.54

YRI-ASN

CNVR2807.2

FLJ22536

0.53

CEU-ASN

CNVR3563.1

GCC1

0.49

YRI-ASN

CNVR3398.2

PSPH

0.47

CEU-YRI

CNVR1841.1

SLIT2

0.46

YRI-ASN

CNVR95.2

PADI4

0.43

YRI-ASN

CNVR2906.1

C6orf142

0.42

CEU-YRI

CNVR7722.1

LILRA3 LILRA5

0.42

YRI-ASN

CNVR6372.1

SORD

0.42

CEU-YRI

CNVR5162.1

C11orf49

0.41

CEU-YRI

CNVR6117.1

KIAA0391

0.41

YRI-ASN

CNVR203.1

L1TD1

0.4

YRI-ASN

CNVR1009.1

ZRANB3

0.4

CEU-YRI

  1. * The index refers to the original study where the gene has already been reported for population differentiation.
  2. 1[3].
  3. 2[45].