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Table 1 Genetic sampling for this study, showing GenBank accession numbers for the five gene regions examined

From: Transitions between Andean and Amazonian centers of endemism in the radiation of some arboreal rodents

Species Collector # Museum voucher Gene region     
    cyt-b 12S rRNA GHR vWF RAG1
Chinchilloidea        
Chinchilla lanigera   (FMNH 178049) AF464760 AF520696 AF332036 AJ238385 KF590658
Octodontoidea        
Abrocomidae        
Abrocoma bennettii    AF244387   FJ855213 AJ251143 JN633625
Abrocoma cinerea    AF244388 AF520666 AF520643   
Octodontidae        
Octodontomys gliroides   (FMNH 162890) AF370706 AF520683 AF520649 KF590672 KF590663
Ctenomyidae        
Ctenomys coyhaiquensis   (FMNH 134300) AF119112 KF590700 KF590678 KF590666 KF590659
Capromyidae        
Capromys pilorides    AF422915 AF433926 AF433950 AJ251142 JN633628
Echimyidae        
Trinomys iheringi   (FMNH 141667) EU313254 AF422868 KF590695 KF590677 EU313337
Thrichomys apereoides    EU313252 AF422855 JX515325 AJ849315 EU313334
Myocastor coypus    EU544663 AF520669 AF520662 AJ251140 AY011892
Proechimys cuvieri   (FMNH 175256) AJ251400 KF590707 KF590693 KF590675 KF590665
In-groups        
Makalata macrura JLP 7197 MVZ 153637 EU313236   KF590687   EU313325
Makalata macrura JLP 15214 MVZ 194324 L23356 AF422879   AJ849312 EU313328
Toromys grandis AMO 824 FMNH 92198 KF590699   KF590694 KF590676 EU313336
Phyllomys blainvillii LPC 246 MVZ 197568 JF297836 KF590706 KF590692 JF297734 KF590664
Phyllomys blainvillii LMP 27 MNRJ 43810 U35412 AF422876 JX515331 JF297732 JX515323
Echimys chrysurus LHE 555 USNM 549594 L23341 AF422877 JX515333   
Echimys chrysurus   ROM 111578 EU313213     EU313303
Lonchothrix emiliae   INPA 2472 AF422921 AF422857    
Mesomys occultus JUR 501 MVZ 194396 L23388 AF422858 KF590689   EU313331
Mesomys occultus MNFS 201   U35415     
Mesomys stimulax MDC 550 USNM 549807 L23389     
Mesomys stimulax LHE 572 USNM 549808 L23392     
Mesomys cf. leniceps JBM 368 MEPN 12212 KF590705 KF590696 KF590688 KF590671 KF590662
Mesomys hispidus MNFS 436 MVZ 194378 L23385 AF422860   AJ849305  
Mesomys hispidus MNFS 745 MVZ 194391 L23395 AF422861    EU313322
Mesomys hispidus LHE 748   L23396     
Mesomys hispidus LHE 836 USNM 579619 L23393     
Mesomys hispidus MNFS 909 MVZ 194393 L23398     
Mesomys hispidus ALG 14162 MBUCV L23371     
Dactylomys boliviensis MNFS 988 MVZ 194298 L23339 AF422875 JX515334 AJ849307  
Dactylomys boliviensis BDP 3942 FMNH 175249 EU313204   KF590679   EU313298
Dactylomys boliviensis SS 2225 FMNH 175250 EU313205   KF590680   EU313299
Dactylomys dactylinus   INPA 2477 L23335 AF422874    
Dactylomys dactylinus LHE 607 USNM 549842 L23336     EU313301
Dactylomys dactylinus LHE 878 USNM 579620 L23337   KF590681 KF590667 EU313300
Dactylomys peruanus LHE 1398 USNM 582148 EU313207     
Dactylomys peruanus LHE 1374 MUSM13052 EU313206     
Kannabateomys amblyonyx YL 182   AF422916 AF422849    
Kannabateomys amblyonyx CTX 2942   AF422917 AF422850   AJ849310  
Olallamys albicauda PH 6445 FMNH 71128 KF590697   KF590690 KF590673  
Olallamys albicauda PH 6488 FMNH 71129 KF590698   KF590691 KF590674  
Isothrix barbarabrownae BDP 3878 MUSM 16819 EU313214 KF590701 KF590682 KF590668 EU313304
Isothrix bistriata MNFS 471 MVZ 194315 L23349   JX515336 AJ849308  
Isothrix bistriata RSV 2293 MUSM 13305 EU313217     EU313307
Isothrix negrensis MNFS 97 INPA L23355 AF422873    
Isothrix negrensis JLP 16749 INPA EU313220     
Isothrix orinoci   USNM 406370 EU313223 KF590702 KF590683 KF590669 KF590660
Isothrix orinoci   USNM 415193 EU313225     
Isothrix pagurus LHE 141 USNM 555639 EU313227 KF590703 KF590684 KF590670 KF590661
Isothrix pagurus   INPA 2463 L23348     
Isothrix sinnamariensis   ROM 106624 AY745734 KF590704 KF590685   EU313312
Isothrix sinnamariensis   T4377 EU313228   KF590686   EU313313
  1. Sequences in bold (with lengths in base pairs, bp) were newly generated for this study. Species listed without museum or collector numbers are chimeric assemblies; chimeras with newly generated sequence data have museum numbers in parentheses that correspond to voucher specimens.