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Table 1 Genetic sampling for this study, showing GenBank accession numbers for the five gene regions examined

From: Transitions between Andean and Amazonian centers of endemism in the radiation of some arboreal rodents

Species

Collector #

Museum voucher

Gene region

    
   

cyt-b

12S rRNA

GHR

vWF

RAG1

Chinchilloidea

       

Chinchilla lanigera

 

(FMNH 178049)

AF464760

AF520696

AF332036

AJ238385

KF590658

Octodontoidea

       

Abrocomidae

       

Abrocoma bennettii

  

AF244387

 

FJ855213

AJ251143

JN633625

Abrocoma cinerea

  

AF244388

AF520666

AF520643

  

Octodontidae

       

Octodontomys gliroides

 

(FMNH 162890)

AF370706

AF520683

AF520649

KF590672

KF590663

Ctenomyidae

       

Ctenomys coyhaiquensis

 

(FMNH 134300)

AF119112

KF590700

KF590678

KF590666

KF590659

Capromyidae

       

Capromys pilorides

  

AF422915

AF433926

AF433950

AJ251142

JN633628

Echimyidae

       

Trinomys iheringi

 

(FMNH 141667)

EU313254

AF422868

KF590695

KF590677

EU313337

Thrichomys apereoides

  

EU313252

AF422855

JX515325

AJ849315

EU313334

Myocastor coypus

  

EU544663

AF520669

AF520662

AJ251140

AY011892

Proechimys cuvieri

 

(FMNH 175256)

AJ251400

KF590707

KF590693

KF590675

KF590665

In-groups

       

Makalata macrura

JLP 7197

MVZ 153637

EU313236

 

KF590687

 

EU313325

Makalata macrura

JLP 15214

MVZ 194324

L23356

AF422879

 

AJ849312

EU313328

Toromys grandis

AMO 824

FMNH 92198

KF590699

 

KF590694

KF590676

EU313336

Phyllomys blainvillii

LPC 246

MVZ 197568

JF297836

KF590706

KF590692

JF297734

KF590664

Phyllomys blainvillii

LMP 27

MNRJ 43810

U35412

AF422876

JX515331

JF297732

JX515323

Echimys chrysurus

LHE 555

USNM 549594

L23341

AF422877

JX515333

  

Echimys chrysurus

 

ROM 111578

EU313213

   

EU313303

Lonchothrix emiliae

 

INPA 2472

AF422921

AF422857

   

Mesomys occultus

JUR 501

MVZ 194396

L23388

AF422858

KF590689

 

EU313331

Mesomys occultus

MNFS 201

 

U35415

    

Mesomys stimulax

MDC 550

USNM 549807

L23389

    

Mesomys stimulax

LHE 572

USNM 549808

L23392

    

Mesomys cf. leniceps

JBM 368

MEPN 12212

KF590705

KF590696

KF590688

KF590671

KF590662

Mesomys hispidus

MNFS 436

MVZ 194378

L23385

AF422860

 

AJ849305

 

Mesomys hispidus

MNFS 745

MVZ 194391

L23395

AF422861

  

EU313322

Mesomys hispidus

LHE 748

 

L23396

    

Mesomys hispidus

LHE 836

USNM 579619

L23393

    

Mesomys hispidus

MNFS 909

MVZ 194393

L23398

    

Mesomys hispidus

ALG 14162

MBUCV

L23371

    

Dactylomys boliviensis

MNFS 988

MVZ 194298

L23339

AF422875

JX515334

AJ849307

 

Dactylomys boliviensis

BDP 3942

FMNH 175249

EU313204

 

KF590679

 

EU313298

Dactylomys boliviensis

SS 2225

FMNH 175250

EU313205

 

KF590680

 

EU313299

Dactylomys dactylinus

 

INPA 2477

L23335

AF422874

   

Dactylomys dactylinus

LHE 607

USNM 549842

L23336

   

EU313301

Dactylomys dactylinus

LHE 878

USNM 579620

L23337

 

KF590681

KF590667

EU313300

Dactylomys peruanus

LHE 1398

USNM 582148

EU313207

    

Dactylomys peruanus

LHE 1374

MUSM13052

EU313206

    

Kannabateomys amblyonyx

YL 182

 

AF422916

AF422849

   

Kannabateomys amblyonyx

CTX 2942

 

AF422917

AF422850

 

AJ849310

 

Olallamys albicauda

PH 6445

FMNH 71128

KF590697

 

KF590690

KF590673

 

Olallamys albicauda

PH 6488

FMNH 71129

KF590698

 

KF590691

KF590674

 

Isothrix barbarabrownae

BDP 3878

MUSM 16819

EU313214

KF590701

KF590682

KF590668

EU313304

Isothrix bistriata

MNFS 471

MVZ 194315

L23349

 

JX515336

AJ849308

 

Isothrix bistriata

RSV 2293

MUSM 13305

EU313217

   

EU313307

Isothrix negrensis

MNFS 97

INPA

L23355

AF422873

   

Isothrix negrensis

JLP 16749

INPA

EU313220

    

Isothrix orinoci

 

USNM 406370

EU313223

KF590702

KF590683

KF590669

KF590660

Isothrix orinoci

 

USNM 415193

EU313225

    

Isothrix pagurus

LHE 141

USNM 555639

EU313227

KF590703

KF590684

KF590670

KF590661

Isothrix pagurus

 

INPA 2463

L23348

    

Isothrix sinnamariensis

 

ROM 106624

AY745734

KF590704

KF590685

 

EU313312

Isothrix sinnamariensis

 

T4377

EU313228

 

KF590686

 

EU313313

  1. Sequences in bold (with lengths in base pairs, bp) were newly generated for this study. Species listed without museum or collector numbers are chimeric assemblies; chimeras with newly generated sequence data have museum numbers in parentheses that correspond to voucher specimens.