Table 2 Proportions of variable and parsimony informative characters, best nucleotide substitution model and parameters selected by jModelTest for each data partition
From: Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes)
Gene | Codon position | Length (bp) | G+C (%) | Variable characters | Parsimony informative characters | Best model by jModelTest | I | G |
|---|---|---|---|---|---|---|---|---|
COI | 1st+2nd | 380 | 55.2/43.2 | 74 (19.47%) | 51 (13.42%) | TIM3+I+G | 0.7510 | 0.4720 |
| Â | 3rd | 190 | 39.2 | 190 (100%) | 189 (99.47%) | GTR+G | - | 0.3310 |
TMO-4C4 | 1st+2nd | 280 | 59.0/32.4 | 114 (40.71%) | 79 (28.21%) | TIM3+I+G | 0.4190 | 0.4040 |
| Â | 3rd | 140 | 63.3 | 137 (97.86%) | 135 (96.32%) | TVM+I+G | 0.0210 | 1.2690 |
Rhod | 1st+2nd | 492 | 51.1/42.4 | 66 (13.41%) | 55 (11.18%) | TIM3+I+G | 0.8340 | 0.6190 |
| Â | 3rd | 245 | 76.9 | 176 (71.84%) | 154 (62.86%) | TVM+I+G | 0.2050 | 0.6940 |
Rag1 | 1st+2nd | 1004 | 56.2/41.2 | 307 (30.58%) | 223 (22.21%) | GTR+I+G | 0.5550 | 0.3760 |
| Â | 3rd | 502 | 66.9 | 455 (90.64%) | 432 (86.06%) | TPM2uf+I+G | 0.0810 | 0.9380 |
H3 | 1st+2nd | 218 | 61.9/47.7 | 21 (9.63%) | 9 (4.13%) | GTR+I+G | 0.7270 | 0.1840 |
| Â | 3rd | 110 | 84.0 | 76 (69.09%) | 65 (59.09%) | TIM2+I+G | 0.2570 | 0.7580 |