Table 2 Presence of bovine ERV families in 8 species of ruminants
From: Evolutionary history of bovine endogenous retroviruses in the Bovidae family
Number of matches in BLAST searches | Number of mapped reads | |||||||
|---|---|---|---|---|---|---|---|---|
Family | Btau | Bind | Bgru | Oari | Chir | Bbub | Ocan | Odal |
Previously known | ||||||||
Class I | ||||||||
BoERV1 | 209 | 139 | 91 | 56 | 84 | 2363 | 4419 | 3263 |
BoERV2 | 3 | 2 | 3 | 4 | 5 | 8 | 74 | 50 |
BoERV3 | 187 | 145 | 103 | 101 | 93 | 1524 | 5285 | 3383 |
BoERV4 | 1 | 1 | 1 | 1 | 1 | 946 | 2907 | 2006 |
BoERV5 | 1 | 1 | 1 | 2 | 3 | 18 | 8 | 11 |
BoERV6 | 1 | 1 | 1 | 1 | 1 | 33 | 43 | 22 |
BoERV7 | 1 | 1 | 1 | 1 | 1 | ND | 41 | 41 |
BoERV8 | 11 | 10 | 12 | 13 | 9 | 35 | 52 | 34 |
BoERV9 | 23 | 15 | 29 | 28 | 35 | 45 | 249 | 180 |
BoERV10 | 18 | 12 | 22 | 14 | 13 | 42 | 130 | 59 |
BoERV11 | 1 | 1 | 1 | 1 | 1 | 29 | 76 | 76 |
BoERV12 | 1 | 1 | 1 | 1 | 1 | 11 | 4 | 6 |
BoERV13 | 9 | 9 | 7 | 7 | 7 | 38 | 105 | 59 |
BoERV14 | 1 | 1 | 1 | 1 | 1 | 13 | 67 | 30 |
BoERV15 | 1 | 1 | 1 | 1 | 1 | 139072 | 796954 | 527908 |
BoERV16 | 5 | 8 | 5 | 8 | 9 | 20 | 91 | 63 |
BoERV17 | 3 | 1 | 1 | 1 | 1 | 15 | 55 | 41 |
BoERV18 | 47 | 42 | 40 | 43 | 44 | 236 | 2044 | 1180 |
Class II | ||||||||
BoERV19 | 22 | 14 | 17 | 18 | 21 | 485 | 29 | 13 |
BoERV20 | 20 | 11 | 21 | 17 | 15 | 40 | 80 | 46 |
BoERV21 | 6 | 2 | 5 | 6 | 5 | 51 | 200 | 151 |
BoERV22 | 8 | 3 | 7 | 6 | 4 | 36 | 117 | 71 |
BoERV23 | 40 | 27 | 33 | 25 | 24 | 106 | 538 | 512 |
BoERV24 | 73 | 56 | 46 | ND | ND | 174 | ND | ND |
Newly detected in this work | ||||||||
Class I | ||||||||
BoERV25 | 4 | 4 | 3 | 3 | 4 | 18 | 65 | 52 |
BoERV26 | 1 | 1 | 1 | ND | ND | 12 | ND | ND |
BoERV27 | 6 | 5 | 7 | 8 | 4 | 11 | 41 | 31 |
Class II | ||||||||
BoERV28 | 7 | 3 | 6 | ND | ND | 101 | ND | ND |
BoERV29 | 1 | 1 | 1 | ND | ND | 24991 | 244188 | 160149 |
BoERV30 | 1 | 1 | 1 | 1 | 1 | 9 | 74 | 75 |