Explicit weighted consensus networks inferred for the honeybee dataset. A) network obtained from full-length sequences using all the six trees from Figure 4 (which were inferred using the ML, NJ, MP and BT approaches); B) network obtained by the sliding window procedure with a ML method used for tree inference; C) network obtained by the sliding window procedure with a Bayesian method used for tree inference. The bootstrap scores of internal branches of the backbone tree and the weights of reticulation branches are indicated. The sliding window procedure was used to detect smaller-scale reticulation events which are represented by dashed lines in parts B and C of the figure. For each small-scale event, the sequence interval corresponding to this event is given between brackets.