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Table 1 Summary diversity statistics, tests of neutrality and indexes of populations growth for all subspecies of P. sundbergi and P. astriata

From: Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands

Subspecies Locus Lenght N Polymorphism Neutrality Population growth
H S Hd π θw D FS R2
P. sundbergi longinsulae Cytb 761 93 28 30 0.875 0.00362 0.00772 −1.62892* −17.813* 0.0445*
  MC1R 617 56 13 10 0.758 0.00261 0.00358 −0.76192 −5.943* 0.0759
  RELNint61 877 52 19 21 0.903 0.00401 0.00587 −1.02213 −6.903* 0.0798
  Rag-2 796 136 17 15 0.554 0.00089 0.00345 −1.97263* −1.97263* 0.0261*
  PDC 360 56 7 6 0.710 0.00255 0.00363 −0.74314 −2.145 0.0772
P. sundbergi sundbergi Cytb 761 17 6 12 0.588 0.00234 0.00466 −1.87150* −0.889 0.0983 *
  MC1R 617 22 9 7 0.853 0.00391 0.00312 0.81826 −2.265 0.1645
  RELNint61 877 22 12 19 0.835 0.00364 0.00596 −1.44378 −4.329* 0.0839
  Rag-2 796 34 6 5 0.371 0.00051 0.00154 −1.76914* −4.537* 0.0611
  PDC 360 22 7 6 0.762 0.00422 0.00457 −0.23808 −1.875 0.1186
P. sundbergi ladiguensis Cytb 761 7 5 6 0.857 0.00300 0.00322 −0.33869 −1.262 0.1543
  MC1R 617 10 5 4 0.844 0.00223 0.00229 −0.09820 −1.468 0.1652
  RELNint61 877 10 6 8 0.758 0.00211 0.00303 −1.20688 −1.540 0.1351
  Rag-2 796 14 2 1 0.143 0.00018 0.00040 −1.15524 −0.595 0.2575
  PDC 360 14 7 6 0.890 0.00394 0.00524 −0.89259 −3.209* 0.1071*
P. astriata astriata Cyt b 761 20 10 18 0.895 0.00541 0.00667 −0.71027 −1.539 0.1044
  MC1R 617 30 8 8 0.660 0.00279 0.00327 −0.44757 −1.813 0.1059
  RELNint61 877 30 11 10 0.867 0.00356 0.00289 0,.3543 −2.134 0.1555
  Rag-2 796 40 3 2 0.188 0.00024 0.00059 −1.11593 −1.548 0.0858
  PDC 360 30 3 2 0.439 0.00132 0.00140 −0.12690 −0.044 0.1184
P. astriata semicarinata Cyt b 761 46 19 20 0.865 0.00289 0.00598 −1.67207* −12.687** 0.0499*
  MC1R 617 64 6 4 0.445 0.00084 0.00137 −0.82812 −2.856* 0.0651
  RELNint61 877 56 10 11 0.728 0.00307 0.00277 0.30059 −0.596 0.1193
  Rag-2 796 92 4 3 0.184 0.00024 0.00074 −1.23597 −2.748 0.0445
  PDC 360 58 3 2 0.101 0.00028 0.00120 −1.31498* −2.516* 0.0673
  1. a N, number of individuals (mtDNA)/chromossomes (nucDNA). Polymorphism indexes: H, number of haplotypes detected; S, number of segregating sites; Hd, haplotype diversity; π, nucleotide diversity; θw, population mutation parameter [62]. Neutrality test: D, Tajima’s D. Population growth tests: FS, Fu’s FS; R2, Ramos-Onsins and Rozas’ R2.* p < 0.05; ** p < 0.01.
  2. b Statistics were not computed for P. astriata population from Fregate as only three individuals were sampled. Populations from outer islands and hypothetically introduced individuals (3, see above) were also excluded of calculations.