Table 2 Summary statistics of parameter estimates for rate asymmetry simulations with 500 taxa under low and high tip bias scenarios
From: Exploring power and parameter estimation of the BiSSE method for analyzing species diversification
Rate asymmetry | λ0 | λ1 | q 10 | q 01 | μ 0 | μ 1 |
|---|---|---|---|---|---|---|
Speciation (Figure 3 ) | ||||||
Low Tip Bias (31:10) | ||||||
Simulated | 0.1 | 0.125 | 0.01 | 0.01 | 0.03 | 0.03 |
Estimated (Mean ± S e ) | 0.101 ± 0.018 | 0.125 ± 0.013 | 0.01 ± 0.003 | 0.01 ± 0.006 | 0.035 ± 0.031 | 0.029 ± 0.022 |
Medium Tip Bias (401:10) | ||||||
Simulated | 0.1 | 0.5 | 0.01 | 0.01 | 0.03 | 0.03 |
Estimated (Mean ± S e ) | 0.107 ± 0.119 | 0.502 ± 0.033 | 0.012 ± 0.007 | 0.09 ± 0.295 | 0.103 ± 0.33 | 0.034 ± 0.046 |
High Tip Bias (1801:10) | ||||||
Simulated | 0.1 | 2.0 | 0.01 | 0.01 | 0.03 | 0.03 |
Estimated (Mean ± S e ) | 0.377 ± 2.57 | 2.048 ± 0.124 | 0.018 ± 0.028 | 3.1 ± 7.6 | 1.78 ± 4.85 | 0.11 ± 0.17 |
Character Change (Figure 4 ) | ||||||
Low Tip Bias (21:10) | ||||||
Simulated | 0.1 | 0.1 | 0.005 | 0.01 | 0.03 | 0.03 |
Estimated (Mean ± S e ) | 0.103 ± 0.033 | 0.099 ± 0.011 | 0.005 ± 0.002 | 0.0099 ± 0.005 | 0.038 ± 0.053 | 0.03 ± 0.02 |
Medium Tip Bias (101:10) | ||||||
Simulated | 0.1 | 0.1 | 0.005 | 0.05 | 0.03 | 0.03 |
Estimated (Mean ± S e ) | 0.104 ± 0.032 | 0.098 ± 0.009 | 0.0058 ± 0.006 | 0.057 ± 0.218 | 0.048 ± 0.075 | 0.026 ± 0.014 |
High Tip Bias (401:10) | ||||||
Simulated | 0.1 | 0.1 | 0.005 | 0.2 | 0.03 | 0.03 |
Estimated (Mean ± S e ) | 0.142 ± 0.145 | 0.098 ± 0.008 | 0.008 ± 0.009 | 0.193 ± 0.443 | 0.281 ± 0.462 | 0.023 ± 0.014 |
Extinction (Figure 5 ) | ||||||
Low Tip Bias (21:10) | ||||||
Simulated | 0.1 | 0.1 | 0.01 | 0.01 | 0.06 | 0.03 |
Estimated (Mean ± S e ) | 0.1 ± 0.02 | 0.099 ± 0.01 | 0.009 ± 0.002 | 0.009 ± 0.006 | 0.063 ± 0.031 | 0.028 ± 0.016 |
Medium Tip Bias (31:10) | ||||||
Simulated | 0.1 | 0.1 | 0.01 | 0.01 | 0.09 | 0.03 |
Estimated (Mean ± S e ) | 0.077 ± 0.014 | 0.102 ± 0.009 | 0.009 ± 0.003 | 0.012 ± 0.013 | 0.093 ± 0.047 | 0.027 ± 0.014 |
High Tip Bias (101:10) | ||||||
Simulated | 0.1 | 0.1 | 0.01 | 0.01 | 0.3 | 0.03 |
Estimated (Mean ± S e ) | 0.116 ± 0.109 | 0.098 ± 0.008 | 0.013 ± 0.03 | 0.194 ± 1.2 | 0.29 ± 0.33 | 0.028 ± 0.015 |