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Table 3 Diversity statistics and neutrality tests of L0d/k subgroups and comparative haplogroups

From: MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa

Group

N seq

N Ht

Hd

Ï€

θS

W-θS

Ne

Tajima’s D

Tajima's D p-value

Fs

Fs p-value

R2

R2 p-value

L0d

317

111

0.962

0.00732

0,01419

15.342

2730

−1.45547

0.028*

−33.984

<0.001***

0.0421

0.069

L0d1a

37

21

0.964

0.00436

0.00584

6.468

1151

−0.84168

0.210

−8.871

0.001**

0.0849

0.120

L0d1b

79

29

0.926

0.00279

0.00551

6.072

1081

−1.51856

0.040*

−17.250

<0.001***

0.0488

0.040*

L0d1c

59

12

0.760

0.00248

0.00388

4.305

766

−1.09831

0.136

−1.628

0.273

0.0714

0.186

L0d2a

91

27

0.722

0.00110

0.00463

5.116

910

−2.29659

<0.001***

−23.082

<0.001***

0.0240

0.005**

L0d2b

6

4

0.867

0.00458

0.00393

4.380

779

1.03370

0.864

1.229

0.701

0.2429

0.738

L0d2c

17

6

0.588

0.00129

0.00239

2.662

474

−1.65319

0.032*

−1.475

0.134

0.1135

0.128

L0d2d

3

2

0.667

0.00357

0.00359

4.000

712

na

na

na

na

na

na

L0d3

21

7

0.710

0.00121

0.00124

1.390

247

−0.08107

0.511

−1.287

0.170

0.1327

0.432

L0dx

4

3

0.833

0.00238

0.00244

2.727

485

na

na

na

na

na

na

L0k1

31

5

0.738

0.00110

0.00089

1.001

178

0.58176

0.742

−0.044

0.518

0.1522

0.721

L0a

21

12

0.905

0.00590

0.00526

5.837

1039

0.30935

0.676

−1.317

0.290

0.1475

0.725

L2a

29

10

0.852

0.00332

0.00367

4.074

725

−0.29380

0.430

−0.739

0.382

0.1153

0.472

L3d

20

6

0.558

0.00281

0.00253

2.819

502

0.41429

0.700

2.092

0.849

0.1506

0.662

L3e

22

16

0.957

0.00575

0.00545

6.035

1074

0.08399

0.601

−5.350

0.056

0.1345

0.611

M

19

18

0.994

0.00620

0.01340

14.592

2596

−2.17227

0.004**

−11.280

<0.001***

0.0462

<0.001***

R

38

35

0.994

0.00793

0.01702

19.326

3439

−1.93058

0.010**

−27.889

<0.001***

0.0466

<0.001***

  1. * p-value < 0.05.
  2. ** p-value < 0.005.
  3. *** p-value < 0.001.