| Gene/intron | If | Hl | Oc | Pn | Eh | Ea | Ae | As | Ac | Pa |  | Gene/intron | If | Hl | Oc | Pn | Eh | Ea | Ae | As | Ac | Pa |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Transfer | trnA-UGC | + | + | + | + | + | + | + | + | + | + | ATP | atpA | + | + | + | + | + | + | + | + | + | + |
RNAs | trnAUGCi38 | + | + | + | + | + | + | + | + | + | + | synthase | atpB | + | + | + | + | + | + | + | + | + | + |
trnC-GCA | + | + | + | + | + | + | + | + | + | + | Â | atpE | + | + | + | + | + | + | + | + | + | + | |
trnD-GUC | + | + | + | + | + | + | + | + | + | + | Â | atpF | + | + | + | + | + | + | + | + | + | + | |
trnE-UUC | + | + | + | + | + | + | + | + | + | + | Â | atpFi145 | + | + | + | + | + | + | + | + | + | + | |
trnF-GAA | + | + | + | + | + | + | + | + | + | + | Â | atpH | + | + | + | + | + | + | + | + | + | + | |
trnfM-CAU | + | + | + | + | + | + | + | + | + | + | Â | atpI | + | + | + | + | + | + | + | + | + | + | |
trnG-GCC | + | + | + | + | + | + | + | + | + | + | Chlorophyll | chlB | + | + | + | - | + | + | + | + | + | + | |
trnG-UCC | + | + | + | + | + | + | + | + | + | + | biosynthesis | chlL | + | + | + | - | + | + | + | + | + | + | |
trnGUCCi23 | + | + | + | + | + | + | + | + | + | + | Â | chlN | + | + | + | - | + | + | + | + | + | + | |
trnH-GUG | + | + | + | + | + | + | + | + | + | + | NADH | ndhA | + | + | + | + | + | + | + | + | + | + | |
trnI-CAU | + | + | + | + | + | + | + | + | + | + | dehydrogenase | ndhAi556 | + | + | + | + | + | + | + | + | + | + | |
trnI-GAU | + | + | + | + | + | + | + | + | + | + | Â | ndhB | + | + | + | + | + | + | + | + | + | + | |
trnIGAUi37 | + | + | + | + | + | + | + | + | + | + | Â | ndhBi726 | + | + | + | + | + | + | + | + | + | + | |
trnK-UUU | + | + | + | + | + | + | + | - | - | - | Â | ndhC | + | + | + | + | + | + | + | + | + | + | |
trnKUUUi37 | + | + | + | + | + | + | + | - | - | - | Â | ndhD | + | + | + | + | + | + | + | + | + | + | |
trnL-CAA | + | + | + | + | + | + | + | Ψ | Ψ | Ψ |  | ndhE | + | + | + | + | + | + | + | + | + | + | |
trnL-UAA (b) | + | + | + | + | + | + | + | + | + | + | Â | ndhF | + | + | + | + | + | + | + | + | + | + | |
trnLUAAi35 | + | + | + | + | + | + | + | + | + | + | Â | ndhG | + | + | + | + | + | + | + | + | + | + | |
trnL-UAG | + | + | + | + | + | + | + | + | + | + | Â | ndhH | + | + | + | + | + | + | + | + | + | + | |
trnM-CAU | + | + | + | + | + | + | + | + | + | + | Â | ndhI | + | + | + | + | + | + | + | + | + | + | |
trnN-GUU | + | + | + | + | + | + | + | + | + | + | Â | ndhJ | + | + | + | + | + | + | + | + | + | + | |
trnP-GGG | + | + | + | + | + | + | + | + | + | + | Â | ndhK | + | + | + | + | + | + | + | + | + | + | |
trnP-UGG | + | + | + | + | + | + | + | + | + | + | Ribosomal | rpl2 | + | + | + | + | + | + | + | + | + | + | |
trnQ-UUG | + | + | + | + | + | + | + | + | + | + | proteins | rpl2i397 | + | + | + | + | + | + | + | + | + | + | |
trnR-ACG | + | + | + | + | + | + | + | + | + | + | Â | rpl14 | + | + | + | + | + | + | + | + | + | + | |
trnR-CCG (c, d) | + | + | + | + | + | + | + | + | + | + | Â | rpl16 | + | + | + | + | + | + | + | + | + | + | |
trnR-UCU | + | + | + | + | + | + | + | + | + | + | Â | rpl16i9 | + | + | + | + | - | + | + | + | + | + | |
trnS-CGA | - | - | + | + | + | + | + | - | - | - | Â | rpl20 | + | + | + | + | + | + | + | + | + | + | |
trnS-GCU | + | + | + | + | + | + | + | + | + | + | Â | rpl21 | + | + | + | + | + | + | + | + | + | + | |
trnS-GGA | + | + | + | + | + | + | + | + | + | + | Â | rpl22 | + | + | + | + | + | + | + | + | + | + | |
trnS-UGA | + | + | + | + | + | + | + | + | + | + | Â | rpl23 | + | + | + | + | + | + | + | + | + | + | |
trnT-GGU | + | - | + | + | + | + | + | + | + | + | Â | rpl32 | + | + | + | + | + | + | + | + | + | + | |
trnT-UGU | + | + | - | + | + | + | + | - | - | - | Â | rpl33 | + | + | + | + | + | + | + | + | + | + | |
trnV-GAC | + | + | + | + | + | + | + | Ψ | - | - |  | rpl36 | + | + | + | + | + | + | + | + | + | + | |
trnV-UAC | + | + | + | + | + | + | + | + | + | + |  | rps2 | Ψ | + | + | + | + | + | + | + | + | + | |
 trnVUACi37 | + | + | + | + | + | + | + | + | + | + |  | rps3 | + | + | + | + | + | + | + | + | + | + | |
trnW-CCA | + | + | + | + | + | + | + | + | + | + | Â | rps4 | + | + | + | + | + | + | + | + | + | + | |
 | trnY-GUA | + | + | + | + | + | + | + | + | + | + |  | rps7 | + | + | + | + | + | + | + | + | + | + |
Ribosomal | rrn4.5 | + | + | + | + | + | + | + | + | + | + | Â | rps8 | + | + | + | + | + | + | + | + | + | + |
RNAs | rrn5 | + | + | + | + | + | + | + | + | + | + | Â | rps11 | + | + | + | + | + | + | + | + | + | + |
rrn16 | + | + | + | + | + | + | + | + | + | + | Â | rps12 | + | + | + | + | + | + | + | + | + | + | |
 | rrn23 | + | + | + | + | + | + | + | + | + | + |  | rps12i114 (e) | t | t | t | t | t | t | t | t | t | t |
Photosystem I | psaA | + | + | + | + | + | + | + | + | + | + | Â | rps12i346 | + | + | - | - | - | - | + | + | + | + |
psaB | + | + | + | + | + | + | + | + | + | + | Â | rps14 | + | + | + | + | + | + | + | + | + | + | |
psaC | + | + | + | + | + | + | + | + | + | + | Â | rps15 | + | + | + | + | + | + | + | + | + | + | |
psaI | + | + | + | + | + | + | + | + | + | + |  | rps16 | Ψ | + | - | - | - | - | + | + | + | + | |
psaJ | + | + | + | + | + | + | + | + | + | + |  | rps16i40 | Ψ | + | - | - | - | - | + | + | + | + | |
 | psaM | + | + | + | + | + | + | + | + | - | - |  | rps18 | + | + | + | + | + | + | + | + | + | + |
Photosystem II | psbA | + | + | + | + | + | + | + | + | + | + | Â | rps19 | + | + | + | + | + | + | + | + | + | + |
psbB | + | + | + | + | + | + | + | + | + | + | RNA | rpoA | + | + | + | + | + | + | + | + | + | + | |
psbC | + | + | + | + | + | + | + | + | + | + | polymerase | rpoB | + | + | + | + | + | + | + | + | + | + | |
psbD | + | + | + | + | + | + | + | + | + | + | Â | rpoC1 | + | + | + | + | + | + | + | + | + | + | |
psbE | + | + | + | + | + | + | + | + | + | + | Â | rpoC1i432 | + | + | + | + | + | + | + | + | + | + | |
psbF | + | + | + | + | + | + | + | + | + | + | Â | rpoC2 | + | + | + | + | + | + | + | + | + | + | |
psbH | + | + | + | + | + | + | + | + | + | + | Miscellaneous | infA | Ψ | + | + | + | + | + | + | + | + | + | |
psbI | + | + | + | + | + | + | + | + | + | + | proteins | ccsA | + | + | + | + | + | + | + | + | + | + | |
psbJ | + | + | + | + | + | + | + | + | + | + | Â | matK | + | + | + | + | + | + | + | + | + | + | |
psbK | + | + | + | + | + | + | + | + | + | + | Â | clpP | + | + | + | + | + | + | + | + | + | + | |
psbL | + | + | + | + | + | + | + | + | + | + | Â | clpPi71 | + | + | + | + | + | + | + | + | + | + | |
psbM | + | + | + | + | + | + | + | + | + | + | Â | cplPi363 | + | + | + | + | - | - | + | + | + | + | |
psbN | + | + | + | + | + | + | + | + | + | + |  | accD | Ψ | + | + | + | + | + | + | + | + | + | |
psbT | + | + | + | + | + | + | + | + | + | + | Â | cemA | + | + | + | + | + | + | + | + | + | + | |
 | psbZ | + | + | + | + | + | + | + | + | + | + | Hypothetical | ycf1 (f) | + | + | + | + | + | + | Ψ | + | + | + |
Cytochrome | petA | + | + | + | + | + | + | + | + | + | + | proteins | ycf2 | + | + | + | + | + | + | + | + | + | + |
petB | + | + | + | + | + | + | + | + | + | + | Â | ycf3 | + | + | + | + | + | + | + | + | + | + | |
petBi6 | + | + | + | + | + | + | + | + | + | + | Â | ycf3i124 | + | + | + | + | + | + | + | + | + | + | |
petD | + | + | + | + | + | + | + | + | + | + | Â | ycf3i354 | + | + | + | + | + | + | + | + | + | + | |
petDi8 | + | + | + | + | + | + | + | + | + | + | Â | ycf4 | + | + | + | + | + | + | + | + | + | + | |
petG | + | + | + | + | + | + | + | + | + | + | Â | ycf12 | + | + | + | + | + | + | + | + | + | + | |
petL | + | + | + | + | + | + | + | + | + | + |  | ycf66 | + | + | - | - | Ψ | Ψ | + | Ψ | - | - | |
 | petN | + | + | + | + | + | + | + | + | + | + |  | ycf66i106 | + | + | - | - | Ψ | ? | + | Ψ | - | - |
Rubisco | rbcL | + | + | + | + | + | + | + | + | + | + | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |