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Table 1 Species with complete genome sequences included in this study

From: A multilocus timescale for oomycete evolution estimated under three distinct molecular clock models

Species

Strain/version

Genome source

Reference

Achlya hypogyna

ATCC48635

unpublished data

(unpublished)

Albugo laibachii

Nc14

NCBI BLAST (http://blast.ncbi.nlm.nih.gov)

[37]

Ectocarpus siliculosus

Ec32

BOGAS (http://bioinformatics.psb.ugent.be)

[38]

Fragilariopsis cylindrus

CCMP1102 v1.0

DOE-Joint Genome Institute (http://www.jgi.doe.gov)

(unpublished)

Hyaloperonospora arabidopsis

Emoy2 v8.3.2

Virginia Bioinformatics Institute (http://www.vbi.vt.edu)

[39]

Phaeodactylum tricornutum

CCAP1055/1 v2.0

DOE-Joint Genome Institute (http://www.jgi.doe.gov)

[40]

Phytophthora capsici

LT1534 v11.0

DOE-Joint Genome Institute (http://www.jgi.doe.gov)

[41]

Phytophthora cinnamomi

v1.0

DOE-Joint Genome Institute (http://www.jgi.doe.gov)

(unpublished)

Phytophthora infestans

T30-4

Broad Institute (http://www.broadinstitute.org)

[42]

Phytophthora parasitica

INRA-310

Broad Institute (http://www.broadinstitute.org)

(unpublished)

Phytophthora ramorum

Pr-102 v1.1

DOE-Joint Genome Institute (http://www.jgi.doe.gov)

[43]

Phytophthora sojae

P6497 v3.0

DOE-Joint Genome Institute (http://www.jgi.doe.gov)

[43]

Pseudo-nitzschia multiseries

CLN-47 v1.0

DOE-Joint Genome Institute (http://www.jgi.doe.gov)

(unpublished)

Pythium ultimum

BR144 v4.0

Pythium Genome Database (http://pythium.plantbiology.msu.edu)

[44]

Saprolegnia parasitica

CBS223.65

Broad Institute (http://www.broadinstitute.org)

[45]

Tetrahymena thermophila

SB210 v2008

Tetrahymena Genome Database (http://ciliate.org)

[46]

Thalassiosira pseudonana

CCMP1335 v3.0

DOE-Joint Genome Institute (http://www.jgi.doe.gov)

[47]

Thraustotheca clavata

ATCC34112

unpublished data

(unpublished)