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Table 4 Log-likehood values and parameter estimates of caleosins under site-specific models

From: Delineation of plant caleosin residues critical for functional divergence, positive selection and coevolution

Model

InL

2∆ℓ

Estimates of parameters

Positively selected sites

M0 (one-ratio)

-4930.58

 

ω = 0.12741

None

M3 (discrete)

-4866.93

127.29** (M0vsM3)

p0 = 0.05223, p1 = 0.37093 p2 = 0.57684, ω0 = 0.00000 ω1 = 0.06189, ω2 = 0.19751

None

M7 (beta)

-4855.75

 

p = 1.18755, q = 7.11704

Not allowed

M8 (beta&ω)

-5816.87

1922.25** (M7vsM8)

p0 = 0.99999, p = 0.95936 q = 1.53716, p1 = 0.00001 ω = 2.94912

70R** 74G** 88 L** 89G 100K** 106A 107S**

  1. Note: p < 0.05 was marked by *p < 0.01 were marked by **;
  2. ω: The substitution rate ratios of non-synonymous (dN or Ka) versus synonymous (dS or Ks) mutations.
  3. Codon (amino acid) positions presented above are based on the AtCLO5 gene.