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Table 4 Log-likehood values and parameter estimates of caleosins under site-specific models

From: Delineation of plant caleosin residues critical for functional divergence, positive selection and coevolution

Model InL 2∆ℓ Estimates of parameters Positively selected sites
M0 (one-ratio) -4930.58   ω = 0.12741 None
M3 (discrete) -4866.93 127.29** (M0vsM3) p0 = 0.05223, p1 = 0.37093 p2 = 0.57684, ω0 = 0.00000 ω1 = 0.06189, ω2 = 0.19751 None
M7 (beta) -4855.75   p = 1.18755, q = 7.11704 Not allowed
M8 (beta&ω) -5816.87 1922.25** (M7vsM8) p0 = 0.99999, p = 0.95936 q = 1.53716, p1 = 0.00001 ω = 2.94912 70R** 74G** 88 L** 89G 100K** 106A 107S**
  1. Note: p < 0.05 was marked by *p < 0.01 were marked by **;
  2. ω: The substitution rate ratios of non-synonymous (dN or Ka) versus synonymous (dS or Ks) mutations.
  3. Codon (amino acid) positions presented above are based on the AtCLO5 gene.