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Table 4 Simple sequence repeats (SSRs) in the five representative Camellia chloroplast genomes

From: Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

Genomes

Repeat units

Number

Location

Region

   

Intron

IGS

CDS-IGS

CDS

LSC

SSC

IR

ASSA

         
 

A/T

51

5

34

1

11

39

3

9

 

AAAAAG/CTTTTT

2

 

2

    

2

OLEI

         
 

A/T

49

6

31

1

11

36

4

9

 

AAAAAG/CTTTTT

2

 

2

    

2

PUBI

         
 

A/T

48

5

31

1

11

35

4

9

 

AAAAAG/CTTTTT

2

 

2

    

2

PETE

         
 

A/T

53

7

35

0

11

41

3

9

 

AAAAAG/CTTTTT

2

 

2

    

2

RETI

         
 

A/T

53

7

34

1

11

40

4

9

 

AGGG/CCCT

1

 

1

    

1

 

AAAAAG/CTTTTT

1

 

1

    

1

  1. ASSA, C. sinensis var. assamica; OLEI, C. oleifera; PUBI, C. pubicosta; PETE, C. petelotii; RETI, C. reticulata.