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Table 4 Polymorphism and fixed difference between pairs of subspecies

From: Differential introgression among loci across a hybrid zone of the intermediate horseshoe bat (Rhinolophus affinis)

 

Polymorphic sites

Fixed differences

Shared mutations

Locus

him-mac

hai-mac

him-hai

him-mac

hai-mac

him-hai

him-mac

hai-mac

him-hai

Cx22

2

0

2

1

0

0

0

0

0

Usp9x

2

2

3

1

0

1

0

1

0

Pola1

17

16

12

1

0

4

3

2

1

Chd1

12

4

11

4

0

3

0

0

0

H2a

20

7

16

1

0

1

1

0

0

Sws1

16

13

17

1

0

2

0

3

0

Thy

11

2

12

0

0

0

1

0

0

Tg

19

21

17

0

0

1

0

5

3

Prestin-4

22

17

18

0

0

2

6

7

3

Prestin-8

16

14

17

1

0

2

1

5

2

Prestin-17

27

14

25

0

0

0

4

7

4

Prestin-18

14

6

11

0

0

0

1

3

1

FoxP2

30

13

29

4

0

8

0

0

0

Kcnq4

4

4

4

0

0

0

0

0

0

  1. him represents himalayanus; mac represents macrurus; hai represents hainanus.