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Table 2 AICc scores for each of the phylogenetic matrix partitioning strategies

From: From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

Matrix Number of characters Partitioning strategy Number of partitions Log-likelihood AICc ΔAICc
ntAll 58,347 OnePart 1 −3135739.544116 6272952.811161 114533.884536
CodonPart 3 −3099273.099639 6200056.468462 41637.541838
GenePart 78 −3120195.077316 6243312.241766 84893.315142
CodonGenePart 234 −3076219.426792 6158418.926624 0
RY 58,347 OnePart 1 −1239354.453402 2480173.246480 21572.787069
CodonPart 3 −1235533.368070 2472537.854401 13937.394990
GenePart 78 −1234706.178899 2471197.311314 12596.851903
CodonGenePart 234 −1228081.159986 2458600.459411 0
ntNo3rd 38,898 OnePart 1 −1387913.034830 2777313.721117 30326.016847
CodonPart 2 −1385570.086154 2772645.570816 25657.866546
GenePart 78 −1376158.263023 2755293.787916 8306.083646
CodonGenePart 156 −1371218.716450 2746987.704270 0
AA 19,449 OnePart 1 −1418038.152084 2837614.101717 8353.616354
GenePart 78 −1413039.660496 2829260.485363 0
  1. Partitioning strategies judged to be the best by the AICc are in bold.