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Table 3 Measures of genetic diversity for the North American vaejovid scorpion Pseudouroctonus reddelli , including sample size ( n ), number of unique haplotypes ( h ), haplotype diversity ( H d ), nucleotide diversity (π), Tajima’s D , Fu’s F s , sum of squares deviation (SSD), and Harpending’s raggedness index (RI)

From: Caves as microrefugia: Pleistocene phylogeography of the troglophilic North American scorpion Pseudouroctonus reddelli

 

mtDNA

ITS

Locality

n

h

H d

Ï€

D

F s

SSD

RI

n

h

H d

Ï€

D

F s

SSD

RI

GT

6

3

0.6000

0.0051

−1.3152

3.3578

0.2035

0.4533

12

5

0.7880

0.0032

2.2171

0.4605

0.0336

0.0826

Aus

5

4

0.9000

0.0093

−0.2287

1.7144

0.2151

0.5900

10

6

0.8440

0.0047

−0.2812

−0.1484

0.0468

0.1269

MF

4

2

0.5000

0.0004

−0.6124

0.1719

0.0219

0.2500

8

3

0.7140

0.0012

1.1039

0.2043

0.0087

0.1225

NB

5

4

0.9000

0.0056

0.8036

0.8832

0.2112

0.5900

10

7

0.9330

0.0050

−0.0445

−1.1634

0.0491

0.1437

SA

6

4

0.8670

0.0064

0.2878

1.9308

0.1831

0.4889

12

8

0.9390

0.0039

0.4190

−2.2709

0.0611

0.1607

HC

5

5

1.0000

0.0043

−0.9543

−1.3451

0.0609

0.1200

10

4

0.8220

0.0034

1.4113

1.4153

0.0088

0.0385

MH

5

 

0.8000

0.0097

−0.4962

4.0693

0.2350

0.5200

10

4

0.7330

0.0024

0.5276

0.5924

0.0711

0.2064

Jun

4

1

0.0000

0.0000

0.0000

0.0000

0.0000

0.0000

6

3

0.7330

0.0047

1.6471

2.3987

0.1648

0.2756

CW

4

3

0.8330

0.0035

0.4671

1.1632

0.2223

0.7500

6

4

0.8670

0.0020

1.3861

−0.8336

0.0758

0.2933

All

47

32

0.9800

0.0156

−0.4569

−3.5808

0.0032

0.0109

86

32

0.8860

0.0042

−0.8142

−20.6848

0.0038

0.0120

  1. Values of F s and Tajima’s D in boldface indicate rejection of the hypothesis of constant population size (P < 0.05). SSD and RI values in boldface indicate failure to reject the hypothesis of recent expansion (P > 0.05). Sampled localities are abbreviated as follows: Georgetown (GT), Austin (Aus), Marble Falls (MF), New Braunfels (NB), San Antonio (SA), Haby Cemetery (HC), Mountain Home (MH), Junction (Jun), and Camp Wood (CW). Sample size for the nuclear internal transcribed spacer region (ITS) represents the number of phased alleles.