Clonality, recombination, and hybridization in the plumbing-inhabiting human pathogen Fusarium keratoplasticuminferred from multilocus sequence typing

Table 1 Characteristics of loci employed

Locus¹	Genome position in MPVI²	P. I. chars.³	SNPs⁴	No. of indels/Msats: no. of alleles for each⁵	C. I.⁶
TEF	sca_2_chr3_3_0: 2429595-2430256	18	23	4 : 3,3,2,2^s	0.75
rDNA	Unknown	9	6*	None observed	0.9
RPB2	sca_20_chr6_4_0: 1850977-1852794	14	21	None observed	1
3968	sca_8_chr1_1_0: 1137337-1138068	11	17	2 : 2^s, 2	0.95
3972	sca_82_chr10_2_0: 791230-792036	10	17	None observed	1
4081	sca_8_chr1_1_0: 544046-544635	13	28	5 : 2,5,2^s,2^s,2^s	0.95
6512	sca_26_chr2_2_0: 74409-74990	9	12	2 : 2^s, 2^s	0.93
5439	sca_37_chr_6_2_0: 374081-374828	6	8	4 : 2^s,2,2^s,2^s	1
5437	sca_37_chr_6_2_0: 78042-78546	25	27	2 : 11,2	0.95
MAT	sca_2_chr3_3_0: N.A.	N.A.	N.A.	N.A.	N.A.

1. Name of locus 2. Scaffold, chromosome and inclusive base pairs of targeted sequences in Fusarium solani f. sp. pisi. 3. Number of parsimony informative characters observed within F. keratoplasticum. 4. Number of single nucleotide polymorphisms observed within F. keratoplasticum. 5. Number of total insertion/deletion and microsatellite polymorphisms observed within F. keratoplasticum (underlined), followed by the number of alleles observed at each, i.e. locus 5437 contains 2 such polymorphisms, one of which has 11 alleles. Superscript s indicates that this polymorphism was found in only one isolate. 6. Consistency index of individual locus maximum parsimony trees. *Putative hybrids contained 4 more SNPs within their rDNA sequences.