TY - JOUR AU - Felsenstein, J. PY - 1978 DA - 1978// TI - Cases in which parsimony or compatibility methods will be positively misleading JO - Syst Zool VL - 27 UR - https://doi.org/10.2307/2412923 DO - 10.2307/2412923 ID - Felsenstein1978 ER - TY - JOUR AU - Hendy, M. D. AU - Penny, D. PY - 1989 DA - 1989// TI - A framework for the quantitative study of evolutionary trees JO - Syst Zool VL - 38 UR - https://doi.org/10.2307/2992396 DO - 10.2307/2992396 ID - Hendy1989 ER - TY - JOUR AU - Sullivan, J. AU - Swofford, D. L. PY - 1997 DA - 1997// TI - Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics JO - J Mamm Evol VL - 4 UR - https://doi.org/10.1023/A:1027314112438 DO - 10.1023/A:1027314112438 ID - Sullivan1997 ER - TY - JOUR AU - Lin, Y. H. AU - McLenachan, P. A. AU - Gore, A. R. AU - Phillips, M. J. AU - Ota, R. AU - Hendy, M. D. AU - Penny, D. PY - 2002 DA - 2002// TI - Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004031 DO - 10.1093/oxfordjournals.molbev.a004031 ID - Lin2002 ER - TY - JOUR AU - Garcia-Moreno, J. AU - Sorenson, M. D. AU - Mindell, D. P. PY - 2003 DA - 2003// TI - Congruent avian phylogenies inferred from mitochondrial and nuclear DNA sequences JO - J Mol Evol VL - 57 UR - https://doi.org/10.1007/s00239-002-2443-9 DO - 10.1007/s00239-002-2443-9 ID - Garcia-Moreno2003 ER - TY - JOUR AU - Delsuc, F. AU - Phillips, M. J. AU - Penny, D. PY - 2003 DA - 2003// TI - Comment on “Hexapod origins: monophyletic or paraphyletic?” JO - Science VL - 301 UR - https://doi.org/10.1126/science.1086558 DO - 10.1126/science.1086558 ID - Delsuc2003 ER - TY - JOUR AU - Chen, W. -. J. AU - Bu, Y. AU - Carapelli, A. AU - Dallai, R. AU - Li, S. AU - Yin, W. -. Y. AU - Luan, Y. -. X. PY - 2011 DA - 2011// TI - The mitochondrial genome of Sinentomon erythranum (Arthropoda: Hexapoda: Protura): an example of highly divergent evolution JO - BMC Evol Biol VL - 11 UR - https://doi.org/10.1186/1471-2148-11-246 DO - 10.1186/1471-2148-11-246 ID - Chen2011 ER - TY - JOUR AU - Schwarz, M. P. AU - Tierney, S. M. AU - Cooper, S. J. B. AU - Bull, N. J. PY - 2004 DA - 2004// TI - Molecular phylogenetics of the allodapine bee genus Braunsapis: A–T bias and heterogeneous substitution parameters JO - Mol Phylogenet Evol VL - 32 UR - https://doi.org/10.1016/j.ympev.2003.11.017 DO - 10.1016/j.ympev.2003.11.017 ID - Schwarz2004 ER - TY - JOUR AU - Sanderson, M. J. AU - Wojciechowski, M. F. AU - Hu, J. M. AU - Khan, T. S. AU - Brady, S. G. PY - 2000 DA - 2000// TI - Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026357 DO - 10.1093/oxfordjournals.molbev.a026357 ID - Sanderson2000 ER - TY - JOUR AU - Zhong, B. AU - Yonezawa, T. AU - Zhong, Y. AU - Hasegawa, M. PY - 2010 DA - 2010// TI - The position of Gnetales among seed plants: overcoming pitfalls of chloroplast phylogenomics JO - Mol Biol Evol VL - 27 UR - https://doi.org/10.1093/molbev/msq170 DO - 10.1093/molbev/msq170 ID - Zhong2010 ER - TY - JOUR AU - Huelsenbeck, J. P. AU - Hillis, D. M. PY - 1993 DA - 1993// TI - Success of phylogenetic methods in the 4-taxon case JO - Syst Biol VL - 42 UR - https://doi.org/10.1093/sysbio/42.3.247 DO - 10.1093/sysbio/42.3.247 ID - Huelsenbeck1993 ER - TY - JOUR AU - Bergsten, J. PY - 2005 DA - 2005// TI - A review of long-branch attraction JO - Cladistics VL - 21 UR - https://doi.org/10.1111/j.1096-0031.2005.00059.x DO - 10.1111/j.1096-0031.2005.00059.x ID - Bergsten2005 ER - TY - JOUR AU - Holland, B. R. AU - Penny, D. AU - Hendy, M. D. PY - 2003 DA - 2003// TI - Outgroup misplacement and phylogenetic inaccuracy under a molecular clock–a simulation study JO - Syst Biol VL - 52 UR - https://doi.org/10.1080/10635150390192771 DO - 10.1080/10635150390192771 ID - Holland2003 ER - TY - JOUR AU - Lartillot, N. AU - Brinkmann, H. AU - Philippe, H. PY - 2007 DA - 2007// TI - Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model JO - BMC Evol Biol VL - 7 UR - https://doi.org/10.1186/1471-2148-7-S1-S4 DO - 10.1186/1471-2148-7-S1-S4 ID - Lartillot2007 ER - TY - JOUR AU - Li, Y. W. AU - Yu, L. AU - Zhang, Y. P. PY - 2007 DA - 2007// TI - “Long-branch Attraction” artifact in phylogenetic reconstruction JO - Hereditas(Beijing) VL - 29 ID - Li2007 ER - TY - JOUR AU - Heath, T. A. AU - Hedtke, S. M. AU - Hillis, D. M. PY - 2008 DA - 2008// TI - Taxon sampling and the accuracy of phylogenetic analyses JO - J Syst Evol VL - 46 ID - Heath2008 ER - TY - JOUR AU - Hedtke, S. M. AU - Townsend, T. M. AU - Hillis, D. M. PY - 2006 DA - 2006// TI - Resolution of phylogenetic conflict in large data sets by increased taxon sampling JO - Syst Biol VL - 55 UR - https://doi.org/10.1080/10635150600697358 DO - 10.1080/10635150600697358 ID - Hedtke2006 ER - TY - JOUR AU - Hillis, D. M. PY - 1996 DA - 1996// TI - Inferring complex phylogenies JO - Nature VL - 383 UR - https://doi.org/10.1038/383130a0 DO - 10.1038/383130a0 ID - Hillis1996 ER - TY - JOUR AU - Nabhan, A. R. AU - Sarkar, I. N. PY - 2012 DA - 2012// TI - The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy JO - Brief Bioinform VL - 13 UR - https://doi.org/10.1093/bib/bbr014 DO - 10.1093/bib/bbr014 ID - Nabhan2012 ER - TY - JOUR AU - Hall, B. G. AU - Salipante, S. J. PY - 2007 DA - 2007// TI - Measures of clade confidence do not correlate with accuracy of phylogenetic trees JO - Plos Comput Biol VL - 3 UR - https://doi.org/10.1371/journal.pcbi.0030051 DO - 10.1371/journal.pcbi.0030051 ID - Hall2007 ER - TY - JOUR AU - Štys, P. AU - Kerzhner, I. PY - 1975 DA - 1975// TI - The rank and nomenclature of higher taxa in recent Heteroptera JO - Acta Entomol Bohemoslov VL - 72 ID - Štys1975 ER - TY - CHAP AU - Popov, Y. A. PY - 1971 DA - 1971// TI - Historical development of the hemipterous infraorder Nepomorpha BT - Trudy Paleontological Institute Academy of Science Volume 129 PB - USSR CY - Nauk ID - Popov1971 ER - TY - JOUR AU - Rieger, C. PY - 1976 DA - 1976// TI - Skelett und muskulatur des kopfes und prothorax von Ochterus marginatus Latreille JO - Zoomorphology VL - 83 UR - https://doi.org/10.1007/BF00993483 DO - 10.1007/BF00993483 ID - Rieger1976 ER - TY - CHAP AU - China, W. E. PY - 1955 DA - 1955// TI - The evolution of the water bugs BT - Symposium on organic evolution PB - Bulletin of the National Institute of Science CY - India ID - China1955 ER - TY - CHAP AU - Mahner, M. PY - 1993 DA - 1993// TI - Systema cryptoceratum phylogeneticum (Insecta, Heteroptera) BT - Zoologica ID - Mahner1993 ER - TY - JOUR AU - Hebsgaard, M. B. AU - Andersen, N. M. AU - Damgaard, J. PY - 2004 DA - 2004// TI - Phylogeny of the true water bugs (Nepomorpha: Hemiptera-Heteroptera) based on 16S and 28S rDNA and morphology JO - Syst Entomol VL - 29 UR - https://doi.org/10.1111/j.0307-6970.2004.00254.x DO - 10.1111/j.0307-6970.2004.00254.x ID - Hebsgaard2004 ER - TY - JOUR AU - Li, M. AU - Wang, J. AU - Tian, X. X. AU - Xie, Q. AU - Liu, H. X. AU - Bu, W. J. PY - 2012 DA - 2012// TI - Phylogeny of the true water bugs (Hemiptera-Heteroptera: Nepomorpha) based on four Hox genes JO - Entomotaxonomia VL - 34 ID - Li2012 ER - TY - JOUR AU - Hua, J. M. AU - Li, M. AU - Dong, P. Z. AU - Cui, Y. AU - Xie, Q. AU - Bu, W. J. PY - 2009 DA - 2009// TI - Phylogenetic analysis of the true water bugs (Insecta: Hemiptera: Heteroptera: Nepomorpha): evidence from mitochondrial genomes JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-134 DO - 10.1186/1471-2148-9-134 ID - Hua2009 ER - TY - JOUR AU - Stefanovic, S. AU - Rice, D. W. AU - Palmer, J. D. PY - 2004 DA - 2004// TI - Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? JO - BMC Evol Biol VL - 4 UR - https://doi.org/10.1186/1471-2148-4-35 DO - 10.1186/1471-2148-4-35 ID - Stefanovic2004 ER - TY - JOUR AU - Hillis, D. M. PY - 1998 DA - 1998// TI - Taxonomic sampling, phylogenetic accuracy, and investigator bias JO - Syst Biol VL - 47 UR - https://doi.org/10.1080/106351598260987 DO - 10.1080/106351598260987 ID - Hillis1998 ER - TY - JOUR AU - Zwickl, D. J. AU - Hillis, D. M. PY - 2002 DA - 2002// TI - Increased taxon sampling greatly reduces phylogenetic error JO - Syst Biol VL - 51 UR - https://doi.org/10.1080/10635150290102339 DO - 10.1080/10635150290102339 ID - Zwickl2002 ER - TY - JOUR AU - Pollock, D. D. AU - Zwickl, D. J. AU - McGuire, J. A. AU - Hillis, D. M. PY - 2002 DA - 2002// TI - Increased taxon sampling is advantageous for phylogenetic inference JO - Syst Biol VL - 51 UR - https://doi.org/10.1080/10635150290102357 DO - 10.1080/10635150290102357 ID - Pollock2002 ER - TY - JOUR AU - Rannala, B. AU - Huelsenbeck, J. P. AU - Yang, Z. AU - Nielsen, R. PY - 1998 DA - 1998// TI - Taxon sampling and the accuracy of large phylogenies JO - Syst Biol VL - 47 UR - https://doi.org/10.1080/106351598260680 DO - 10.1080/106351598260680 ID - Rannala1998 ER - TY - JOUR AU - Delsuc, F. AU - Scally, M. AU - Madsen, O. AU - Stanhope, M. J. AU - de Jong, W. W. AU - Catzeflis, F. M. AU - Springer, M. S. AU - Douzery, E. J. PY - 2002 DA - 2002// TI - Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003989 DO - 10.1093/oxfordjournals.molbev.a003989 ID - Delsuc2002 ER - TY - JOUR AU - Holder, M. AU - Lewis, P. O. PY - 2003 DA - 2003// TI - Phylogeny estimation: traditional and Bayesian approaches JO - Nat Rev Genet VL - 4 UR - https://doi.org/10.1038/nrg1044 DO - 10.1038/nrg1044 ID - Holder2003 ER - TY - JOUR AU - Saitoh, K. AU - Sado, T. AU - Mayden, R. L. AU - Hanzawa, N. AU - Nakamura, K. AU - Nishida, M. AU - Miya, M. PY - 2006 DA - 2006// TI - Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world’s largest freshwater fish clade based on 59 whole mitogenome sequences JO - J Mol Evol VL - 63 UR - https://doi.org/10.1007/s00239-005-0293-y DO - 10.1007/s00239-005-0293-y ID - Saitoh2006 ER - TY - JOUR AU - Wheeler, W. C. AU - Schuh, R. T. AU - Bang, R. PY - 1993 DA - 1993// TI - Cladistic relationships among higher groups of Heteroptera: congruence between morphological and molecular data sets JO - Entomol Scand VL - 24 UR - https://doi.org/10.1163/187631293X00235 DO - 10.1163/187631293X00235 ID - Wheeler1993 ER - TY - JOUR AU - Graham, S. W. AU - Olmstead, R. G. AU - Barrett, S. C. PY - 2002 DA - 2002// TI - Rooting phylogenetic trees with distant outgroups: a case study from the commelinoid monocots JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003999 DO - 10.1093/oxfordjournals.molbev.a003999 ID - Graham2002 ER - TY - JOUR AU - Ware, J. L. AU - Litman, J. AU - Klass, K. -. D. AU - Spearman, L. A. PY - 2008 DA - 2008// TI - Relationships among the major lineages of Dictyoptera: the effect of outgroup selection on dictyopteran tree topology JO - Syst Entomol VL - 33 UR - https://doi.org/10.1111/j.1365-3113.2008.00424.x DO - 10.1111/j.1365-3113.2008.00424.x ID - Ware2008 ER - TY - JOUR AU - Lyons-Weiler, J. AU - Hoelzer, G. A. AU - Tausch, R. J. PY - 1998 DA - 1998// TI - Optimal outgroup analysis JO - Biol J Linn Soc VL - 64 UR - https://doi.org/10.1111/j.1095-8312.1998.tb00346.x DO - 10.1111/j.1095-8312.1998.tb00346.x ID - Lyons-Weiler1998 ER - TY - JOUR AU - Luo, A. R. AU - Zhang, Y. Z. AU - Qiao, H. J. AU - Shi, W. F. AU - Murphy, R. W. AU - Zhu, C. D. PY - 2010 DA - 2010// TI - Outgroup selection in tree reconstruction: a case study of the family Halictidae (Hymenoptera: Apoidea) JO - Acta Entomologica Sinica VL - 53 ID - Luo2010 ER - TY - JOUR AU - Qiu, Y. L. AU - Lee, J. AU - Whitlock, B. A. AU - Bernasconi-Quadroni, F. AU - Dombrovska, O. PY - 2001 DA - 2001// TI - Was the ANITA rooting of the angiosperm phylogeny affected by long-branch attraction? JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003962 DO - 10.1093/oxfordjournals.molbev.a003962 ID - Qiu2001 ER - TY - JOUR AU - Smith, A. B. PY - 1994 DA - 1994// TI - Rooting molecular trees - problems and strategies JO - Biol J Linn Soc VL - 51 UR - https://doi.org/10.1111/j.1095-8312.1994.tb00962.x DO - 10.1111/j.1095-8312.1994.tb00962.x ID - Smith1994 ER - TY - JOUR AU - Li, T. AU - Gao, C. Q. AU - Cui, Y. AU - Xie, Q. AU - Bu, W. PY - 2013 DA - 2013// TI - The complete mitochondrial genome of the stalk-eyed bug Chauliops fallax Scott, and the monophyly of Malcidae (Hemiptera: Heteroptera) JO - Plos One VL - 8 UR - https://doi.org/10.1371/journal.pone.0055381 DO - 10.1371/journal.pone.0055381 ID - Li2013 ER - TY - JOUR AU - Hua, J. M. AU - Li, M. AU - Dong, P. Z. AU - Cui, Y. AU - Xie, Q. AU - Bu, W. J. PY - 2008 DA - 2008// TI - Comparative and phylogenomic studies on the mitochondrial genomes of Pentatomomorpha (Insecta: Hemiptera: Heteroptera) JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-610 DO - 10.1186/1471-2164-9-610 ID - Hua2008 ER - TY - BOOK AU - Schuh, R. T. AU - Slater, J. A. PY - 1995 DA - 1995// TI - True bugs of the world (Hemiptera: Heteroptera): classification and natural history: Cornell University Press ID - Schuh1995 ER - TY - JOUR AU - Soltis, D. E. AU - Albert, V. A. AU - Savolainen, V. AU - Hilu, K. AU - Qiu, Y. L. AU - Chase, M. W. AU - Farris, J. S. AU - Stefanović, S. AU - Rice, D. W. AU - Palmer, J. D. AU - Soltis, P. S. PY - 2004 DA - 2004// TI - Genome-scale data, angiosperm relationships, and ‘ending incongruence’: a cautionary tale in phylogenetics JO - Trends Plant Sci VL - 9 UR - https://doi.org/10.1016/j.tplants.2004.08.008 DO - 10.1016/j.tplants.2004.08.008 ID - Soltis2004 ER - TY - JOUR AU - Delsuc, F. AU - Brinkmann, H. AU - Philippe, H. PY - 2005 DA - 2005// TI - Phylogenomics and the reconstruction of the tree of life JO - Nat Rev Genet VL - 6 UR - https://doi.org/10.1038/nrg1603 DO - 10.1038/nrg1603 ID - Delsuc2005 ER - TY - JOUR AU - Philippe, H. AU - Brinkmann, H. AU - Lavrov, D. V. AU - Littlewood, D. T. AU - Manuel, M. AU - Worheide, G. AU - Baurain, D. PY - 2011 DA - 2011// TI - Resolving difficult phylogenetic questions: why more sequences are not enough JO - Plos Biol VL - 9 UR - https://doi.org/10.1371/journal.pbio.1000602 DO - 10.1371/journal.pbio.1000602 ID - Philippe2011 ER - TY - CHAP AU - Swofford, D. L. AU - Olsen, G. J. AU - Waddell, P. J. AU - Hillis, D. M. ED - Hillis, D. M. ED - Moritz, C. ED - Mable, B. K. PY - 1996 DA - 1996// TI - Phylogenetic inference BT - Molecular systematics PB - Sinauer Associates CY - Sunderland, Massachusetts ID - Swofford1996 ER - TY - JOUR AU - Reineke, A. AU - Karlovsky, P. AU - Zebitz, C. P. PY - 1998 DA - 1998// TI - Preparation and purification of DNA from insects for AFLP analysis JO - Insect Mol Biol VL - 7 UR - https://doi.org/10.1046/j.1365-2583.1998.71048.x DO - 10.1046/j.1365-2583.1998.71048.x ID - Reineke1998 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT JO - Nucleic Acids Symp Ser VL - 41 ID - Hall1999 ER - TY - JOUR AU - Lowe, T. M. AU - Eddy, S. R. PY - 1997 DA - 1997// TI - tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.5.0955 DO - 10.1093/nar/25.5.0955 ID - Lowe1997 ER - TY - JOUR AU - Tamura, K. AU - Peterson, D. AU - Peterson, N. AU - Stecher, G. AU - Nei, M. AU - Kumar, S. PY - 2011 DA - 2011// TI - MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr121 DO - 10.1093/molbev/msr121 ID - Tamura2011 ER - TY - JOUR AU - Štys, P. AU - Jansson, A. PY - 1988 DA - 1988// TI - Check-list of recent family-group and genus-group names of Nepomorpha (Heteroptera) of the world JO - Acta Entomol Fenn VL - 50 ID - Štys1988 ER - TY - JOUR AU - Thompson, J. D. AU - Gibson, T. J. AU - Plewniak, F. AU - Jeanmougin, F. AU - Higgins, D. G. PY - 1997 DA - 1997// TI - The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.24.4876 DO - 10.1093/nar/25.24.4876 ID - Thompson1997 ER - TY - JOUR AU - Zhou, J. AU - Liu, X. AU - Stones, D. S. AU - Xie, Q. AU - Wang, G. PY - 2011 DA - 2011// TI - MrBayes on a graphics processing unit JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btr140 DO - 10.1093/bioinformatics/btr140 ID - Zhou2011 ER - TY - JOUR AU - Silvestro, D. AU - Michalak, I. PY - 2012 DA - 2012// TI - raxmlGUI: a graphical front-end for RAxML JO - Org Divers Evol VL - 12 UR - https://doi.org/10.1007/s13127-011-0056-0 DO - 10.1007/s13127-011-0056-0 ID - Silvestro2012 ER - TY - JOUR AU - Posada, D. AU - Crandall, K. A. PY - 1998 DA - 1998// TI - MODELTEST: testing the model of DNA substitution JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.9.817 DO - 10.1093/bioinformatics/14.9.817 ID - Posada1998 ER - TY - JOUR AU - McVay, J. D. AU - Carstens, B. PY - 2013 DA - 2013// TI - Testing monophyly without well-supported gene trees: evidence from multi-locus nuclear data conflicts with existing taxonomy in the snake tribe Thamnophiini JO - Mol Phylogenet Evol VL - 68 UR - https://doi.org/10.1016/j.ympev.2013.04.028 DO - 10.1016/j.ympev.2013.04.028 ID - McVay2013 ER - TY - JOUR AU - Huelsenbeck, J. P. AU - Hillis, D. M. AU - Nielsen, R. PY - 1996 DA - 1996// TI - A likelihood-ratio test of monophyly JO - Syst Biol VL - 45 UR - https://doi.org/10.1093/sysbio/45.4.546 DO - 10.1093/sysbio/45.4.546 ID - Huelsenbeck1996 ER - TY - BOOK AU - Swofford, D. L. PY - 2003 DA - 2003// TI - PAUP*: Phylogenetic analysis using parsimony (* and other methods). Version 4 PB - Sinauer Associates CY - Sunderland, Massachusetts ID - Swofford2003 ER - TY - CHAP AU - Li, T. AU - Hua, J. AU - Wright, A. M. AU - Cui, Y. AU - Xie, Q. AU - Bu, W. AU - Hillis, D. M. PY - 2014 DA - 2014// TI - Long-branch attraction and the phylogeny of true water bugs (Hemiptera: Nepomorpha) as estimated from mitochondrial genomes BT - Dryad Digital Repository ID - Li2014 ER -