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Table 6 Rational BDIM yielding the shortest mean time of family formation

From: Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models

  N D R(D)(N) T (D) N
Sce 130 3.13 416.0 20.8
Dme 335 2.67 1131.0 56.55
Cel 662 2.44 2317.7 115.9
Ath 1535 2.65 5553.8 277.7
Hsa 1151 2.71 4079.5 204.
Tma 97 3.56 317.8 15.9
Mth 43 2.40 125.2 6.3
Sso 81 2.19 254.2 12.7
Bsu 124 2.05 404.4 20.
Eco 140 2.16 460.4 23.
  1. For each genome, D is the value of the model degree d , which results in the minimum of the mean time of formation of the largest family, T (d) N = R (d) ( N )/ r du (in Ga, under indicated value of d and r du = 2 × 10 -8 ) are shown. Species abbreviations: Sce, Saccharomyces cerevisiae , Dme, Drosophila melanogaster , Cel, Caenorhabditis elegans , Ath, Arabidopsis thaliana , Hsa, Homo sapiens , Tma, Thermotoga maritima , Mth, Methanothermobacter thermoautotrophicum , Sso, Sulfolobus solfataricus , Bsu, Bacillus subtilis , Eco, Escherichia coli .