| α
AB
& Calculated π | α
AB
& Optimized π | Δl | P* |
---|
Logarithm Likelihood | -5087.72 | -5055.97 | 31.75 | <0.0001 |
CPU Time (s)+ | 213 | 14902 | Â | Â |
- The alignment tested here is the same alignment used in Table 1. Calculated π means frequency vector calculated from the alignment.
- * The likelihood ratio test (LRT) [58] is used to test whether optimized π is significantly different from calculated π. The difference in number of free parameters between these two models is 19.
- +CPU times were computed on a Dell PowerEdge 8450 server (CPU 700MHz, RAM 8G).