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Table 2 Pairwise comparisons of Sin1 cDNA and amino acid sequences from various species

From: The evolution of the Sin1 gene product, a little known protein implicated in stress responses and type I interferon signaling in vertebrates

 

S. pomb e (665 aa)

N. crassa (798 aa)

C. elegans (684 aa)

D. melanogaster (569 aa)

A. gambiae (548 aa)

F. Rubripes (530 aa)

X. lavis (520 aa)

G. gallus (522 aa)

M. musculus (522 aa)

R. norvegicus (522 aa)

O. aries (522 aa)

B. Taurus (522 aa)

S. scrofa (522 aa)

H. sapiens (522 aa)

S. pombe (665 aa)

-

28.2

34.1*

28.8*

35.6*

21.7

28.2

21.1

24.6

26.1

25.5

25.4

24.8

25.3

N. crassa (798 aa)

NA

-

32.6*

28.3*

30.7*

22.6

31.9*

20.3

36.2*

20.5

20.9

20.9

20.9

20.5

C. elegans (684 aa)

NA

NA

-

27.5*

29.4*

22.3

22.6

21.8

23.0

23.0

23.5

23.2

22.8

23.2

D. melanogaster (569 aa)

NA

NA

NA

-

46.0

31.8

34.5

32.9

35.2

35.3

31.1

31.7

32.0

31.9

A. gambiae (548 aa)

NA

NA

NA

NA

-

34.9

33.4

35.3

33.8

34.0

33.2

33.0

33.2

33.4

F. rubripes (530 aa)

NA

NA

NA

NA

NA

-

80.0

82.9

78.7

79.2

79.8

80.2

79.8

80.4

X. lavis (520 aa)

NA

NA

NA

NA

NA

71.8

-

88.5

84.4

85.0

84.6

85.2

85.2

85.6

G. gallus (522 aa)

NA

NA

NA

NA

NA

74.7

78.0

-

88.0

88.3

88.3

89.3

89.3

90.0

M. musculus (522 aa)

NA

NA

NA

NA

NA

73.6

76.1

80.9

-

99.2

91.7

96.9

97.3

96.9

R. norvegicus (522 aa)

NA

NA

NA

NA

NA

73.6

76.3

80.5

96.2

-

91.3

96.9

96.9

96.9

O. aries (522 aa)

NA

NA

NA

NA

NA

73.3

75.3

81.7

96.0

96.0

-

98.7

97.9

98.1

B. taurus (522 aa)

NA

NA

NA

NA

NA

73.4

75.6

81.7

91.9

91.8

98.2

-

98.9

99.0

S. scrofa (522 aa)

NA

NA

NA

NA

NA

73.1

75.8

82.3

92.5

92.2

94.7

95.7

-

98.7

H. sapiens (522 aa)

NA

NA

NA

NA

NA

73.9

75.9

82.8

92.4

92.5

94.1

94.9

95.7

-

  1. Notes: 1. Numbers in the upper-right half above the diagonal are identity percentages for amino acid sequences.
  2. 2. Numbers in the lower-left half below the diagonal are identity percentage for DNA sequences.
  3. 3. Numbers below the species names are the lengths of the Sin1 protein.
  4. 4. NA, Not applicable, i.e. no significant similarity was found.
  5. 5. Astericks, significant similarity occurs only in one region of the protein. For details, see the notes below:
  6. S. pombe-C. elegans: significant similarity occurs in one region (170 aa: 252–391).
  7. S. pombe- D. melanogaster : significant similarity occurs in one region (120 aa: 278–407).
  8. S. pombe- A. gambiae: significant similarity occurs in one region (94 aa: 282–375).
  9. N.crassa-C. elegans: significant similarity occurs in one region (90 aa: 376–465).
  10. N.crassa-D. melanogaster: significant similarity occurs in one region (58 aa: 407–464).
  11. N.crassa-A. gambiae: significant similarity occurs in one region (207 aa: 250–456).
  12. N.crassa-Xenopus: significant similarity occurs in one region (127 aa: 338–464).
  13. N.crassa-M. musculus: significant similarity occurs in one region (127 aa: 338–464).
  14. C. elegans-D. melanogaster: significant similarity occurs in one region (169 aa: 198–366).
  15. C. elegans-A. gambiae: significant similarity occurs in one region (178aa: 198–375).
  16. 6. Sequences and their GenBank accession numbers are: O. aries (AY547378), B. taurus (BF230134, AV603930, CB433957, BM480500), H. sapiens (NM_024117, BC002326), S. scrofa (CF791532, CF178115, BP459453, CF177341), M. muscus (BQ713136, BF781677, BU152256), R. norvegicus (CK476507, BE127132, BF553331, BU759329, AW141364), G. gallus (AF153127), X. laevis (BC043789), F. rubripes (Sequence accessible at http://www.ensembl.org), D. melanogaster (AE003814), A. gambiae (XM_319576); S. pombe (AL136521, NP_594703, CAB66311); N. crassa (XP_322410).