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Table 4 Combined analysis Combined log likelihoods over all genes under the nonstationary (NONSTA), stationary (STA), and reversible (REV) models. If NONSTA or STA places the root correctly, the corresponding log likelihood appears in bold.

From: Rooting a phylogenetic tree with nonreversible substitution models

group

root placement

NONSTA

STA

REV

 

human

-21536

-21743

-21765

1

chimp

-21551

-21746

-21765

 

gorilla

-21470

-21744

-21765

 

human

-26266

-26566

-26589

2

chimp

-26270

-26567

-26589

 

gorilla

-26223

-26566

-26589

 

orangutan

-26172

-26566

-26589

 

interior

-26241

-26563

-26589

 

human

-53049

-53387

-53427

 

mouse

-53029

-53393

-53427

3

chicken

-52848

-53388

-53427

 

frog

-52682

-53382

-53427

 

interior

-52833

-53391

-53427