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Table 2 Five most connected domains in the innermost core-layers using their degree k in the full domain networks of S. cerevisiae, C. elegans, D. melanogaster, M. musculus and H. sapiens. Notably, the innermost layer l (equivalent to the innermost core) is not populated by the largest hubs, indicating that a high degree alone does not necessarily imply a central placement in the network. In fact, we observe that with even a considerably low degree k domains are placed in the inner cores, a domain specific feature we call globally central. We also observe highly connected domains that only make it to the outer cores, indicating a locally central position in the respective networks.

From: Evolutionary cores of domain co-occurrence networks

S. cerevisiae

C. elegans

D. melanogaster

M. musculus

H. sapiens

domain

l

k

domain

l

k

domain

l

k

domain

l

k

domain

l

k

SH3

4

16

pkinase

6

44

pkinase

6

50

pkinase

8

64

pkinase

8

74

pkinase

4

13

PH

6

38

SH3

6

41

EGF

8

60

EGF

8

64

C2

4

11

SH3

6

33

PH

6

40

PH

8

49

PH

8

59

DAG PE-bind

4

4

efhand

6

27

ank

6

38

SH3

8

49

SH3

8

52

pkinase C

4

4

PDZ

6

26

PDZ

6

35

ig

8

44

ig

8

52

PH

3

14

EGF

5

38

zf-C2H2

5

24

fn31

7

31

zf-C3HC4

7

51

helicase C

3

13

ank

5

36

zf-C3HC4

5

23

Idl-recept a

7

26

WD-40

7

39

zf-C3H4

3

10

zf-C3HC4

5

24

UBA

5

23

tsp 1

7

25

tsp 1

7

27

UBA

3

10

ig

5

24

helicase C

5

22

zf-CCHC

7

24

UBA

7

26

myb DNA-bind

3

10

fn3

5

20

efhand

5

21

WW

7

21

vwc

7

21

WD40

2

11

F-box

4

19

WD-40

4

18

zf-C3HC4

6

48

zf-C2H2

6

31

AAA

2

10

zf-C2H2

4

18

rrm

4

13

WD40

6

31

PHD

6

27

ank

2

8

WD-40

4

17

TPR

4

11

zf-C2H2

6

28

helicase C

6

24

UCH-2

2

6

rrm

4

15

tsp 1

4

10

helicase C

6

22

rrm

6

23

HATPase c

2

6

PHD

4

15

zf-CCHC

4

10

TPR

6

19

TPR

6

23

clathrin

1

3

UBA

3

10

ubiquitin

3

10

PHD

5

25

BRCT

5

18

ENTH

1

2

homeobox

3

10

AAA

3

9

bromodomain

5

19

PWWP

5

14

zf-CCCH

1

2

Kunitz BPTI

3

10

heme 1

3

7

BRCT

5

17

DEAD

5

14

exo-endo-phos

1

2

metallophos

3

9

GTP-EFTU

3

7

SET

5

13

zf-RanBP

5

13

SAP

1

2

Dna J

3

7

kinesin

3

6

DEAD

5

13

myb-DNA bind

5

13