Table 3 Bacterial genomes used in this paper. All phyla in GenBank as of December 2004 are represented. Bold letters give abbreviations used in Table 1.
From: Automatic selection of representative proteins for bacterial phylogeny
Specific Genome | Taxonomy (Phylum; Class) |
|---|---|
Corynebacterium glutamicum | Actinobacteria;Actinobacteria |
Mycob acterium tuberculosis H37Rv | Actinobacteria;Actinobacteria |
Bifid obacterium longum | Actinobacteria;Actinobacteria |
Streptomyces avermitilis | Actinobacteria;Actinobacteria |
Aquifex aeolicus | Aquificae;Aquificae |
Bac teroides thetaiotaomicron VPI-5482 | Bacteroidetes/Chlorobi;Bacteroidetes |
Chlor obium tepidum TLS | Bacteroidetes/Chlorobi;Chlorobi |
Porphyromonas gingivalis W83 | Bacteroidetes/Chlorobi;Chlorobi |
Chlamydia trachomatis | Chlamydiae/Verrucomicrobia;Chlamydiae |
Chlamydophila pneumoniae AR39 | Chlamydiae/Verrucomicrobia;Chlamydiae |
Chloroflexus aurantiacus | Chloroflexi;Chloroflexi |
Gloeobacter violaceus | Cyanobacteria;Chroococcales |
Synechococcus sp WH8102 | Cyanobacteria;Chroococcales |
Syn echocystis PCC6803 | Cyanobacteria;Chroococcales |
Nos toc sp | Cyanobacteria;Nostocales |
Pro chlorococcus marinus MIT9313 | Cyanobacteria;Prochlorophytes |
Deinococcus radiodurans | Deinococcus-Thermus;Deinococci |
Bacillus subtilis | Firmicutes;Bacilli |
Oceanobacillus iheyensis | Firmicutes;Bacilli |
List eria monocytogenes | Firmicutes;Bacilli |
Staph ylococcus aureus subsp. aureus N315 | Firmicutes;Bacilli |
Lact ococcus lactis | Firmicutes;Bacilli |
Strep tococcus pneumoniae R6 | Firmicutes;Bacilli |
Clost ridium tetani E88 | Firmicutes;Clostridia |
Thermoanaerobacter tengcongensis | Firmicutes;Clostridia |
Mycop lasma | Firmicutes;Mollicutes |
Urea plasma | Firmicutes;Mollicutes |
Fusobacterium nucleatum | Fusobacteria;Fusobacteria |
Pirellula sp | Planctomycetes;Planctomycetacia |
Caul obacter crescentus | Proteobacteria;Alphaproteobacteria |
Rhodopseudomonas palustris | Proteobacteria;Alphaproteobacteria |
Bru cella melitensis | Proteobacteria;Alphaproteobacteria |
Bradyrhizobium japonicum | Proteobacteria;Alphaproteobacteria |
Mesor hizobium loti | Proteobacteria;Alphaproteobacteria |
Rick ettsia conorii | Proteobacteria;Alphaproteobacteria |
Ral stonia solanacearum | Proteobacteria;Betaproteobacteria |
Neiss eria meningitidis Z2491 | Proteobacteria;Betaproteobacteria |
Chromobacterium violaceum | Proteobacteria;Betaproteobacteria |
Bordetella pertussis | Proteobacteria;Betaproteobacteria |
Nitrosomonas europaea | Proteobacteria;Betaproteobacteria |
Coxiella burnetii | Proteobacteria;Gammaproteobacteria |
Esch erichia coli K12 | Proteobacteria;Gammaproteobacteria |
Haem ophilus influenzae | Proteobacteria;Gammaproteobacteria |
Pseudomonas aeruginosa | Proteobacteria;Gammaproteobacteria |
Shigella flexneri 2a | Proteobacteria;Gammaproteobacteria |
Shewanella oneidensis | Proteobacteria;Gammaproteobacteria |
Vib rio cholerae | Proteobacteria;Gammaproteobacteria |
Xanthomonas campestris | Proteobacteria;Gammaproteobacteria |
Xyl ella fastidiosa | Proteobacteria;Gammaproteobacteria |
Desulf ovibrio desulfuricans | Proteobacteria;delta/epsilon subdivisions |
Geo bacter sulfurreducens | Proteobacteria;delta/epsilon subdivisions |
Campy lobacter jejuni | Proteobacteria;delta/epsilon subdivisions |
Heli cobacter pylori J99 | Proteobacteria;delta/epsilon subdivisions |
Wol inella succinogenes | Proteobacteria;delta/epsilon subdivisions |
Borr elia burgdorferi | Spirochaetes;Spirochaetes |
Lep tospira interrogans | Spirochaetes;Spirochaetes |
Trep onema pallidum | Spirochaetes;Spirochaetes |
Thermotoga maritima | Thermotogae;Thermotogae |