Table 1 Codon usage of two-fold degenerate NNY codons in Cryptomonas sp. and Guillardia theta rbc L
Clade | Asn | His | Asp | Tyr | Cys | Phe |
|---|---|---|---|---|---|---|
Strain | AAC/AAU | CAC/CAU | GAC/GAU | UAC/UAU | UGC/UGU | UUC/UUU |
Guillardia theta | 15/0 | 8/2 | 12/8 | 12/3 | 0/7 | 12/5 |
C. curvata | ||||||
   CCAC 0006 | 13/2 | 7/3 | 7/13 | 10/5 | 4/5 | 14/3 |
   CCAC 0080 | 13/2 | 4/6 | 10/10 | 11/4 | 3/6 | 11/6 |
C. marssonii | ||||||
   CCAC 0086 | 16/0 | 6/4 | 14/6 | 12/3 | 1/7 | 11/6 |
   CCAC 0103 | 15/1 | 6/4 | 10/9 | 13/2 | 2/5 | 10/3 |
C. ovata | ||||||
   CCAC 0064 | 8/8 | 8/2 | 7/13 | 5/10 | 0/8 | 10/7 |
   M1171 | 10/6 | 5/5 | 7/13 | 5/10 | 1/7 | 10/7 |
C. pyrenoidifera | ||||||
   CCAP 979/61 | 15/0 | 8/2 | 12/8 | 13/3 | 0/7 | 12/5 |
   CCMP 152 and M1077 | 15/0 | 9/1 | 13/7 | 12/3 | 1/6 | 13/4 |
C. tetrapyrenoidosa | ||||||
   M1092 | 13/3 | 8/2 | 13/6 | 10/5 | 3/5 | 12/5 |
   NIES 279 | 12/4 | 8/2 | 10/9 | 10/5 | 1/7 | 13/4 |
NoPyr | ||||||
   CCAC 0031 and CCAP 979/46 | 15/0 | 10/0 | 14/6 | 13/2 | 4/3 | 16/1 |
   CCAC 0109 | 15/0 | 9/1 | 15/5 | 10/5 | 1/5 | 15/2 |
   M0741 | 15/0 | 6/4 | 13/7 | 9/6 | 3/3 | 15/2 |
clade LB (basally diverging taxa first) | ||||||
C. gyropyrenoidosa | ||||||
   CCAC 0108 | 12/4 | 5/5 | 9/10 | 11/4 | 1/5 | 12/6 |
C. lundii | ||||||
   CCAC 0107 | 12/4 | 6/4 | 4/15 | 4/11 | 0/7 | 9/8 |
C. borealis | ||||||
   CCAC 0113 | 6/9 | 2/8 | 2/18 | 3/12 | 0/8 | 5/12 |
   SCCAP K-0063 | 8/7 | 2/8 | 5/14 | 4/11 | 1/7 | 5/12 |
C. paramaecium | ||||||
   CCAC 0056 and M2180 | 6/9 | 3/7 | 5/15 | 6/9 | 0/7 | 4/13 |
   CCAP 977/1 | 6/9 | 6/4 | 4/16 | 4/11 | 1/6 | 5/12 |
   M2452 | 5/10 | 3/7 | 7/12 | 7/8 | 1/6 | 6/11 |