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Table 1 Proteome sequence data sets downloaded for MultiCoil analysis

From: Coiled-coil protein composition of 22 proteomes – differences and common themes in subcellular infrastructure and traffic control

Organism

Number of proteins

Date of download

Comments (info as provided by EBI and TIGR)

Archaea (extremophiles):

   

Archaeoglobus fulgidus (A.f.)

2400

10-Jun-2004

hyperthermophilic, organoheterotrophic-lithoautotrophic, sulfur-metabolizing; glycoprotein envelope, flagellated

Methanococcus jannaschii (M.j.)

1782

10-Jun-2004

thermophilic, methanogenic, autotrophic, strict anaerobic; grows under high pressure in deep sea, flagellated

Sulfolobus solfataricus (S.s.)

2939

28-Jan-2004

thermophilic, sulfuric acid-producing, aerobic; no flagella, but pilus-like and pseudopodium-like structures

Thermoplasma acidophilum (T.a.)

1479

28-Jan-2004

thermoacidophilic; flagellated, no cell wall

Gram-positive bacteria:

   

Actinobacteria: Mycobacterium tuberculosis (M.t.)

3995

10-Jun-2004

animal pathogen (tuberculosis); no flagella

Bacilli: Bacillus subtilis (B.s.)

4167

28-Jan-2004

capable of producing endospores, flagellated

Mollicutes: Mycoplasma genitalium (M.g.)

486

10-Jun-2004

animal pathogen (surface parasite), smallest known self-replication cell & genome; no flagella

Gram-negative bacteria:

   

Alphaproteobacteria: Agrobacterium tumefaciens (A.tu.)

5393

10-Jun-2004

plant pathogen (crown gall); flagellated

Betaproteobacteria: Chromobacterium violaceum (C.v.)

4400

10-Jun-2004

subtropical/tropical; produces antimicrobial violacein, flagellated

Gammaproteobacteria: Escherichia coli K12 (E.c.)

4356

28-Jan-2004

enterobacterium, laboratory strain, flagellated

Epsilonproteobacteria: Heliobacter pylori (H.p.)

1556

10-Jun-2004

animal pathogen; micro-aerophilic, spiral-shaped, flagellated

Chlamydiae: Chlamydia pneumoniae (C.p.)

1110

10-Jun-2004

animal pathogen (obligate intracellular parasite), no flagella

Spirochaetes: Borrelia burgdorferi (B.b.)

1558

10-Jun-2004

animal pathogen (Lime disease); spiral-shaped, flagellated

Cyanobacteria: Synechocystis sp. PCC6803 (S.sp.)

3164

28-Jan-2004

photosynthetic (oxygenic), no flagella

Yeast:

   

Saccharomyces cerevisiae (S.c.)

6191

28-Jan-2004

baker's yeast

Schizosaccaromyces pombe (S.p.)

5037

28-Jan-2004

fission yeast

Metazoa:

   

Caenorhabditis elegans (C.e.)

22873

28-Jan-2004

nematode

Drosophila melanogaster (D.m.)

16196

28-Jan-2004

insect (fruitfly)

Mus musculus (M.m.)

27577

28-Jan-2004

mammal (mouse)

Homo sapiens (H.s.)

29024

28-Jan-2004

mammal (human)

Plants:

   

Arabidopsis thaliana (A.t.)

26945

28-Jan-2004

dicot

Oryza sativa ssp. Japonica (O.s.)

56056

9-Jan-2004

monocot (rice)

  1. Proteome sequence sets were downloaded from the European Bioinformatics Institute (EBI) [106] or The Institute for Genome Research (TIGR) [107]. The number of protein sequence entries reflects the annotation of ORFs at the time of download.