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Table 1 Proteome sequence data sets downloaded for MultiCoil analysis

From: Coiled-coil protein composition of 22 proteomes – differences and common themes in subcellular infrastructure and traffic control

Organism Number of proteins Date of download Comments (info as provided by EBI and TIGR)
Archaea (extremophiles):    
Archaeoglobus fulgidus (A.f.) 2400 10-Jun-2004 hyperthermophilic, organoheterotrophic-lithoautotrophic, sulfur-metabolizing; glycoprotein envelope, flagellated
Methanococcus jannaschii (M.j.) 1782 10-Jun-2004 thermophilic, methanogenic, autotrophic, strict anaerobic; grows under high pressure in deep sea, flagellated
Sulfolobus solfataricus (S.s.) 2939 28-Jan-2004 thermophilic, sulfuric acid-producing, aerobic; no flagella, but pilus-like and pseudopodium-like structures
Thermoplasma acidophilum (T.a.) 1479 28-Jan-2004 thermoacidophilic; flagellated, no cell wall
Gram-positive bacteria:    
Actinobacteria: Mycobacterium tuberculosis (M.t.) 3995 10-Jun-2004 animal pathogen (tuberculosis); no flagella
Bacilli: Bacillus subtilis (B.s.) 4167 28-Jan-2004 capable of producing endospores, flagellated
Mollicutes: Mycoplasma genitalium (M.g.) 486 10-Jun-2004 animal pathogen (surface parasite), smallest known self-replication cell & genome; no flagella
Gram-negative bacteria:    
Alphaproteobacteria: Agrobacterium tumefaciens (A.tu.) 5393 10-Jun-2004 plant pathogen (crown gall); flagellated
Betaproteobacteria: Chromobacterium violaceum (C.v.) 4400 10-Jun-2004 subtropical/tropical; produces antimicrobial violacein, flagellated
Gammaproteobacteria: Escherichia coli K12 (E.c.) 4356 28-Jan-2004 enterobacterium, laboratory strain, flagellated
Epsilonproteobacteria: Heliobacter pylori (H.p.) 1556 10-Jun-2004 animal pathogen; micro-aerophilic, spiral-shaped, flagellated
Chlamydiae: Chlamydia pneumoniae (C.p.) 1110 10-Jun-2004 animal pathogen (obligate intracellular parasite), no flagella
Spirochaetes: Borrelia burgdorferi (B.b.) 1558 10-Jun-2004 animal pathogen (Lime disease); spiral-shaped, flagellated
Cyanobacteria: Synechocystis sp. PCC6803 (S.sp.) 3164 28-Jan-2004 photosynthetic (oxygenic), no flagella
Yeast:    
Saccharomyces cerevisiae (S.c.) 6191 28-Jan-2004 baker's yeast
Schizosaccaromyces pombe (S.p.) 5037 28-Jan-2004 fission yeast
Metazoa:    
Caenorhabditis elegans (C.e.) 22873 28-Jan-2004 nematode
Drosophila melanogaster (D.m.) 16196 28-Jan-2004 insect (fruitfly)
Mus musculus (M.m.) 27577 28-Jan-2004 mammal (mouse)
Homo sapiens (H.s.) 29024 28-Jan-2004 mammal (human)
Plants:    
Arabidopsis thaliana (A.t.) 26945 28-Jan-2004 dicot
Oryza sativa ssp. Japonica (O.s.) 56056 9-Jan-2004 monocot (rice)
  1. Proteome sequence sets were downloaded from the European Bioinformatics Institute (EBI) [106] or The Institute for Genome Research (TIGR) [107]. The number of protein sequence entries reflects the annotation of ORFs at the time of download.