Skip to main content

Advertisement

Table 3 Contribution to clusters

From: Coiled-coil protein composition of 22 proteomes – differences and common themes in subcellular infrastructure and traffic control

species ORFs total CCs total long CCs species-specific in cross-species clusters
Archaea
T.a. 1479 29 6 1 5
M.j. 1782 54 6 2 4
A.f. 2400 65 14 6 8
S.s. 2939 77 10 8 2
gram + bacteria
M.g. 486 21 5 3 2
M.t. 3995 70 10 7 3
B.s. 4167 144 17 10 7
gram - bacteria
C.p. 1110 43 6 5 1
H.p. 1556 87 9 6 3
B.b. 1558 76 14 13 1
S. sp. 3164 133 25 16 9
E.c. 4356 111 16 6 10
C.v. 4400 161 19 9 10
A.tu. 5393 161 18 10 8
yeast
S.p. 5037 303 62 25 37
S.c. 6191 344 73 35 38
plants
A.t. 26945 1518 284 59 225
O.s. 56056 3740 997 795 202
animals
D.m. 16196 1174 317 117 200
C.e. 22873 1234 304 144 160
M.m. 27577 1709 512 56 456
H.s. 29024 2400 855 189 666
  1. Contribution of genomes to cross-species clusters (based on clustering using a P-score cut-off of 1.0e-06). For species name abbreviations, see Table 1.