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Table 1 The IQD gene family of Arabidopsis thaliana

From: Genome-wide comparative analysis of the IQD gene families in Arabidopsis thaliana and Oryza sativa

Gene Identifier REFSEQ Accession Protein ID cDNA Accessiona Protein ID Expressionb Protein Namec Size (aa) Mass (kD) IP Predicted_Locationd
          PSORT TargetP
At1g01110 NM_099993 NP_563618 AY085363* A C D IQD18 527 59.2 10.3 N ?
At1g14380 NM_101305 NP_563950 BT005935A AO64870 A B C D IQD28 664 72.8 9.7 N ?
At1g17480 NM_101610 NP_173191 AY702665 A C D IQD7 370 41.0 10.5 ? ?
At1g18840 NM_101741 NP_173318 AY702666 A B C D IQD30 572 62.7 9.2 N ?
At1g19870 NM_101842 NP_564097 BT001081A AN46862 A B C D IQD32 794 86.8 5.2 N C 0.65/4
At1g51960 NM_104077 NP_175608 - - IQD27 351 39.3 10.1 ? ?
At1g72670 NM_105926 NP_177411 BT010652A AR07516 A C D IQD8 414 45.9 10.3 N ?
At1g74690 NM_106127 NP_177607 AY128860A AM91260 A C D IQD31 587 65.2 9.6 ? ?
At2g02790 NM_126334 NP_178382 - A C IQD29 636 69.8 9.6 N C 0.71/4
At2g26180 NM_128176 NP_180187 BX818988 C D IQD6 416 46.9 10.5 N ?
At2g26410 NM_128198 NP_180209 BX840898 A IQD4 527 58.3 10.3 ? ?
At2g33990 NM_128950 NP_180946 AU237877 AV557487 A D IQD9 249 28.5 10.8 N ?
At2g43680 NM_180068 NP_850399 BT008408A AP37767 A B IQD14 668 74.3 11.3 ? ?
At3g09710 NM_111805 NP_187582 AY827468 A C D IQD1 454 50.5 10.4 N ?
At3g15050 NM_112367 NP_188123 BX825987 B C D IQD10 259 29.6 10.3 ? C 0.91/1
At3g16490 NM_112520 NP_188270 BX824788 A D IQD26 398 48.7 10.1 ? ?
At3g22190 NM_113116 NP_188858 - A IQD5 400 44.5 10.1 N ?
At3g49260 NM_114785 NP_566917 BT000602A AN18171 A B D IQD21 471 52.1 10.0 N ?
At3g49380 NM_114798 NP_190507 - - IQD15 352 40.8 10.2 N ?
At3g51380 NM_114997 NP_190706 BX838271 (FL-EST) A D IQD20 103 11.8 12.4 M M 0.80/2
At3g52290 NM_115089 NP_190797 BT005639A AO64059 A B C D IQD3 430 48.1 10.6 ? ?
At3g59690 NM_115831 NP_191528 BT001176A AN65063 A D IQD13 517 58.5 10.9 ? ?
At4g00820 NM_116308 NP_567191 BX826435 A C D IQD17 534 60.0 10.3 ? M 0.38/5
At4g10640 NM_117132 NP_192802 BT010145A AQ22614 A D IQD16 423 48.7 10.1 N ?
At4g14750 NM_117560 NP_193211 BX827601 A C D IQD19 387 43.9 9.7 ? ?
At4g23060 NM_118435 NP_194037 AY702664 A B C D IQD22 543 60.3 10.2 ? M 0.50/4
At4g29150 NM_119059 NP_194644 BT003896A AO41944 A D IQD25 383 41.4 10.7 ? M 0.78/3
At5g03040 NM_120382 NP_568110 AY143972A AN28911 A B C D IQD2 461 50.5 10.6 N C 0.55/3
At5g03960 NM_120478 NP_196016 BX829656 - IQD12 403 46.0 10.6 ? M 0.76/2
At5g07240 NM_120806 NP_196341 BT006056A AP04041 A C D IQD24 401 45.3 10.3 ? M 0.54/4
At5g13460 NM_121349 NP_196850 AY128736A AM91136 C D IQD11 443 50.8 10.0 N ?
At5g35670 NM_122958 NP_568529 AK128736B AD43467 C D IQD33 442 49.5 8.5 ? M 0.47/5
At5g62070 NM_125600 NP_201013 AY143917A AN28856 A C D IQD23 403 44.3 10.5 N C 0.51/5
  1. a Full-length cDNAs (asterisk denotes a cDNA clone that is likely 5'-truncated).
  2. b Additional evidence for IQD gene expression provided by (A) whole-genome array [105], (B) community microarray data [94], (C) Massively Parallel Signature Sequencing (MPSS, [106]), (D) EST clones.
  3. c Nomenclature of IQD genes is arbitrary. Levy et al. [37] cloned IQD1 and reported closely related genes IQD2-IQD6. The designation of IQD7-IQD33 is based on the phylogenetic analysis presented in Figure 1a.
  4. d PSORT predictions: N (nucleus), C (chloroplast), M (mitochondrion). TargetP predictions: values indicate score (0.00 – 1.00) and reliability class (1–5; best class is 1).