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Table 2 Parameter estimates used to calculate the percentage diversity that survived transmission

From: Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1

Parameter

Meana

HPDb Lower

HPD Upper

ESSc

env V1-V4

    

N R Ï„

1216.7

534.4

2033.9

1338.94

N D Ï„

1014.0

541.2

1538.0

955.71

t trans d

30.9

15.2

46.9

174.57

N R Ï„(t trans )

1.6

1.0

3.1

2456.87

δ

0.17

0.06

0.35

2043.08

gag p24

    

N R Ï„

926.6

419.9

1512.6

1454.31

N D Ï„

770.7

413.5

1184.7

1356.90

t trans d

42.4

27.5

53.0

274.51

N R Ï„(t trans )

2.0

1.0

4.5

3532.69

δ

0.29

0.07

0.67

3310.56

  1. aMean of the marginal posterior probability distribution of parameter values
  2. bHighest Posterior Density encompassing 95% of the marginal posterior distribution of parameter values
  3. cEffective Sample Size (number of independent samples taken from the posterior distribution of values for a particular parameter)
  4. dEstimated time of transmission in days prior to the day of the fist recipient sample (day 0)