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Table 3 Taxa included in phylogenetic analyses with GenBank accession numbers and references.

From: Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids

Taxon GenBank Accession Numbers Reference
Gymnosperms – Outgroups   
   Pinus thunbergii NC_001631 Wakasugi et al. 1994 [84]
   Ginkgo biloba DQ069337-DQ069702 Leebens-Mack et al 2005 [5]
Basal Angiosperms   
   Amborella trichopoda NC_005086 Goremykin et al. 2003 [3]
   Nuphar advena DQ069337-DQ069702 Leebens-Mack et al 2005 [5]
   Nymphaea alba NC_006050 Goremykin et al. 2004 [2]
Monocots   
   Acorus americanus DQ069337-DQ069702 Leebens-Mack et al 2005 [5]
   Oryza sativa NC_001320 Hiratsuka et al. 1989 [85]
   Saccharum officinarum NC_006084 Asano et al. 2004 [86]
   Triticum aestivum NC_002762 Ikeo and Ogihara, unpublished
   Typha latifolia DQ069337-DQ069702 Leebens-Mack et al 2005 [5]
   Yucca schidigera DQ069337-DQ069702 Leebens-Mack et al 2005 [5]
   Zea mays NC_001666 Maier et al. 1995 [87]
Magnoliids   
   Calycanthus floridus NC_004993 Goremykin et al. 2003 [43]
Eudicots   
   Arabidopsis thaliana NC_000932 Sato et al. 1999 [88]
   Atropa belladonna NC_004561 Schmitz-Linneweber et al. 2002 [57]
   Cucumis sativus NC_007144 Plader et al. unpublished
   Eucalyptus globulus AY780259 Steane 2005 [89]
   Glycine max DQ317523 Saski et al. 2005 [49]
   Gossypium hirsutum DQ345959 Lee et al. [55]
   Lotus corniculatus NC_002694 Kato et al. 2000 [42]
   Medicago truncatula NC_003119 Lin et al., unpublished
   Nicotiana tabacum NC_001879 Shinozaki et al. 1986 [90]
   Oenothera elata NC_002693 Hupfer et al. 2000 [44]
   Panax schinseng NC_006290 Kim and Lee 2004 [91]
   Ranunculus macranthus DQ069337-DQ069702 Leebens-Mack et al 2005 [5]
   Solanum lycopersicum DQ347959 Daniell et al. [92]
   Solanum bulbocastanum DQ347958 Daniell et al. [92]
   Spinacia oleracea NC_002202 Schmitz-Linneweber et al. 2001 [93]
   Vitis vinifera DQ424856 Current study