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Table 3 Taxa included in phylogenetic analyses with GenBank accession numbers and references.

From: Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids

Taxon

GenBank Accession Numbers

Reference

Gymnosperms – Outgroups

  

   Pinus thunbergii

NC_001631

Wakasugi et al. 1994 [84]

   Ginkgo biloba

DQ069337-DQ069702

Leebens-Mack et al 2005 [5]

Basal Angiosperms

  

   Amborella trichopoda

NC_005086

Goremykin et al. 2003 [3]

   Nuphar advena

DQ069337-DQ069702

Leebens-Mack et al 2005 [5]

   Nymphaea alba

NC_006050

Goremykin et al. 2004 [2]

Monocots

  

   Acorus americanus

DQ069337-DQ069702

Leebens-Mack et al 2005 [5]

   Oryza sativa

NC_001320

Hiratsuka et al. 1989 [85]

   Saccharum officinarum

NC_006084

Asano et al. 2004 [86]

   Triticum aestivum

NC_002762

Ikeo and Ogihara, unpublished

   Typha latifolia

DQ069337-DQ069702

Leebens-Mack et al 2005 [5]

   Yucca schidigera

DQ069337-DQ069702

Leebens-Mack et al 2005 [5]

   Zea mays

NC_001666

Maier et al. 1995 [87]

Magnoliids

  

   Calycanthus floridus

NC_004993

Goremykin et al. 2003 [43]

Eudicots

  

   Arabidopsis thaliana

NC_000932

Sato et al. 1999 [88]

   Atropa belladonna

NC_004561

Schmitz-Linneweber et al. 2002 [57]

   Cucumis sativus

NC_007144

Plader et al. unpublished

   Eucalyptus globulus

AY780259

Steane 2005 [89]

   Glycine max

DQ317523

Saski et al. 2005 [49]

   Gossypium hirsutum

DQ345959

Lee et al. [55]

   Lotus corniculatus

NC_002694

Kato et al. 2000 [42]

   Medicago truncatula

NC_003119

Lin et al., unpublished

   Nicotiana tabacum

NC_001879

Shinozaki et al. 1986 [90]

   Oenothera elata

NC_002693

Hupfer et al. 2000 [44]

   Panax schinseng

NC_006290

Kim and Lee 2004 [91]

   Ranunculus macranthus

DQ069337-DQ069702

Leebens-Mack et al 2005 [5]

   Solanum lycopersicum

DQ347959

Daniell et al. [92]

   Solanum bulbocastanum

DQ347958

Daniell et al. [92]

   Spinacia oleracea

NC_002202

Schmitz-Linneweber et al. 2001 [93]

   Vitis vinifera

DQ424856

Current study