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Figure 5 | BMC Evolutionary Biology

Figure 5

From: A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank

Figure 5

Distributions of hydrophobicity related quantities from a non-redundant subset of the PDB: Mean hydrophobicity; Root mean square hydrophobicity; Ratio between mean and root mean square hydrophobicity, τ, ratio between τ = <h>/ 〈 h 2 〉 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaadaGcaaqaaiabgMYiHlabdIgaOnaaCaaaleqabaGaeGOmaidaaOGaeyOkJepaleqaaaaa@32CC@ and W 1 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8srps0lbbf9q8WrFfeuY=Hhbbf9v8qqaqFr0xc9pk0xbba9q8WqFfea0=yr0RYxir=Jbba9q8aq0=yq=He9q8qqQ8frFve9Fve9Ff0dmeaabaqaciaacaGaaeqabaqabeGadaaakeaadaGcaaqcaawaaiabdEfaxPWaaSbaaKqaGfaacqaIXaqmaeqaaaqabaaaaa@2F29@ = N MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaadaGcaaqaaiabd6eaobWcbeaaaaa@2DEC@ <c>. All these quantities are narrowly distributed, with standard deviations of the order of less than 1/10 of the average value.

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