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Table 1 This table shows the ability of PHOG-BLAST and PSI-BLAST to match members of different subalignments belonging to one protein family against each other as BBHs when the initial multiple alignment of the protein family was split in two subalignments. See the Results section for explanation

From: PHOG-BLAST – a new generation tool for fast similarity search of protein families

Test index

Database

Total number of BBHs to be found

Number of BBHs found

   

PHOG-BLAST

PSI-BLAST

1

COG

3164

3096

3109

2

PFAM

7315

6773

4278

3

BALIBASE

143

70

0