Table 1 Five genomic regions orthologous among maize, sorghum, and rice.
From: Retrotranspositions in orthologous regions of closely related grass species
Region | Orthologs | Major Gene | Background | Chromosome location | Clone | Size (bp) | Accession |
|---|---|---|---|---|---|---|---|
orp1/orp2 | orp1 | orange pericarp | Maize B73 | 4S | Z573F08 | 181627 | AY555142 |
Zmfiel1 | Zmfie1 duplicate | Maize B73 | 4S | Z078P04 | 189000 | AY560576 | |
orp2 | orp1 duplicate | Maize B73 | 10S | Z573L14 | 144792 | AY555143 | |
Zmfiel2 | fie homolog | Maize B73 | 10S | Z273B07/Z409L08 | 138000 | AY560578 | |
orph1 | orp1 homolog | Sorghum Btx623 | unknown | SB18C08 | 159669 | AF466200 | |
fieh1 | fie homolog | Sorghum Btx623 | unknown | SB250O22 | 84604 | AF466200 | |
rice ortholog | japonica | 8 | OJ1613-G04 | 136186 | AP003896 | ||
rice extension | japonica | 8 | P0680F05 | 17000 | AP005620 | ||
r1/b1 | r1 | red color | Maize B73 | 10L | Z138B04 | 115734 | AF466202 |
r1 extension | 3' extension | Maize B73 | 10L | Z333J11 | 207475 | AF466202 | |
b1 | booster | Maize B73 | 2S | Z092E12 | 147198 | AF466203 | |
b1 extension | 3' extension | Maize B73 | 2S | Z556K20 | 90000 | AY542310 | |
rh1 | r homolog | Sorghum Btx623 | unknown | SB20O07 | 157237 | AY542312 | |
rice ortholog | japonica | 4 | OSJNBa0065O17 | 167446 | AL606682 | ||
rice extension | japonica | 4 | OSJNBb0012E24 | 127506 | AL606647 | ||
c1/pl1 | c1 | colored aleurone | Maize B73 | 9S | Z438D03 | 184890 | AY530950 |
c1 extension | 3' extension | Maize B73 | 9S | Z214A02 | 159000 | AY530951 | |
pl1 | purple plant | Maize B73 | 6L | Z576C20 | 155173 | AY530952 | |
pl1 extension | 3' extension | Maize B73 | 6L | Z264N17 | 161000 | AY560577 | |
ch1 | c1 homolog | Sorghum Btx623 | unknown | SB35P03 | 144120 | AF466199 | |
rice ortholog | japonica | 6 | OSJNBb0015B15 | 123160 | AP005652 | ||
tb1/tb2 | tb1 | teosinte branched | Maize B73 | 1L | Z178A11 | 130843 | AF464738 |
tb1 extension | 5' extension | Maize B73 | 1L | Z013I05 | 152337 | AY325816 | |
tb2 | tb1 duplicate | Maize B73 | 5S | Z195D10 | 141937 | AF466646 | |
tbh1 | tb1 homolog | Sorghum Btx623 | unknown | SB45119 | 77947 | AF466204 | |
rice ortholog | japonica | 3 | OSJNBa0004G17 | 139071 | AC091775 | ||
tbp1/tbp2 | tbp1 | TATA-binding protein | Maize B73 | 1L | Z477F24 | 212000 | AY542798 |
tbp2 | tbp1 duplicate | Maize B73 | 5S | Z474J15 | 194000 | AY542797 | |
tbph1 | tbp1 homolog | Sorghum Btx623 | unknown | SB32H17 | 100707 | AF466201 | |
rice ortholog | japonica | 3 | OSJNBa0075A22 | 153828 | AC133859 |