Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of Kingdom Fungi inferred from RNA polymerase II subunit genes

Table 2 Results of Shimodaira-Hasegawa (SH) tests for alternative hypotheses.

	SH test
Hypothesis^a	-lnL	Δ-lnL	P-value	Rejected ^b
Bayesian phylogeny (= ML tree)	-78347.57	0	1.000	best
Microsporidia sister to Fungi (MP tree)	-78378.47	30.90	0.297	no
Microsporidia clustered with Blastocladiales	-78407.55	59.98	0.030	yes
Microsporidia clustered to other Members of Chytridiomycota	-78392.05	44.48	0.156	no
Microsporidia clustered with Zygomycota	-78437.65	90.08	0.002	yes
Microsporidia clustered with Dikaryomycota	-78453.52	105.95	0.002	yes
Microsporidia clustered with Animals	-78424.12	76.55	0.010	yes
Glomales sister to Dikaryomycota	-78383.99	36.42	0.248	no
Blastocladiales sister to zygo_trichomycetes	-78418.76	71.19	0.009	yes
Blastocladiales sister to Zygomycota	-78429.05	81.48	0.019	yes
monophyletic Chytridiomycota	-78376.30	28.73	0.367	no

Note: lnL, natural log likelihood; P values, the confidence limit for rejection of the alternative tree topology.
a. The maximum likelihood tree (ML tree), the most parsimonious tree (MP tree), and the most likely trees under the constrained conditions.
b. Best, the tree with the highest likelihood in comparison; Yes, rejected by maximum likelihood (P < 0.05); No, not rejected by maximum likelihood.

ISSN: 2730-7182