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Table 1 Fungal organisms used in this analysis are listed. Phylum, sub-phylum and classes are shown. *Gene sets were generated in house.

From: A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

Species Phlum Genes Citation or sequencing group
Candida albicans Ascomycota 6,662 [86]
Candida dubliniensis* Ascomycota 6,027 Sanger Centre
Candida tropicalis* Ascomycota 6,530 Broad-FGI
Candida parapsilosis* Ascomycota 4,891 Sanger Centre
Candida lusitaniae* Ascomycota 5,941 Broad-FGI
Candida guilliermondii* Ascomycota 5,235 Broad-FGI
Debaryomyces hansenii Ascomycota 6,896 [49]
Saccharomyces bayanus Ascomycota 4,492 [87, 88]
Saccharomyces castellii Ascomycota 4,677 [87]
Saccharomyces cerevisiae Ascomycota 5,873 [89]
Saccharomyces kudriavzevii Ascomycota 3,768 [87]
Saccharomyces mikatae Ascomycota 4,525 [87, 88]
Saccharomyces paradoxus Ascomycota 4,788 [88]
Candida glabrata Ascomycota 5,272 [49]
Kluyveromyces lactis Ascomycota 5,331 [49]
Saccharomyces kluyveri Ascomycota 2,968 [87]
Kluyveromyces waltii Ascomycota 5,214 [90]
Ashbya gossypii Ascomycota 4,718 [91]
Yarrowia lipolytica Ascomycota 6,666 [49]
Magnaporthe grisea Ascomycota 11,109 [92]
Neurospora crassa Ascomycota 10,620 [93]
Podospora anserina * Ascomycota 10,443 Broad-FGI
Chaetomium globosum Ascomycota 11,124 Broad-FGI
Trichoderma reesei * Ascomycota 13,248 JGI-DOE
Fusarium graminearum Ascomycota 11,640 Broad-FGI
Fusarium verticillioides * Ascomycota 12,751 Broad-FGI
Aspergillus oryzae Ascomycota 12,062 NITE (Japan)
Aspergillus nidulans Ascomycota 9,541 Broad-FGI
Aspergillus fumigatus Ascomycota 9,923 TIGR and Sanger Centre
Aspergillus terreus * Ascomycota 10,285 Microbia
Uncinocarpus reesii * Ascomycota 6,573 Broad-FGI
Histoplasma capsulatum * Ascomycota 6,605 Broad-FGI
Coccidioides immitis * Ascomycota 6,622 Broad-FGI
Sclerotinia sclerotiorum Ascomycota 14,522 Broad-FGI
Botrytis cinerea Ascomycota 16,448 Broad-FGI
Stagonospora nodorum Ascomycota 16,597 Broad-FGI
Schizosaccharomyces pombe Ascomycota 4,991 [94]
Coprinus cinereus* Basidiomycota 9,452 Broad-FGI
Phanerochaete chrysosporium* Basidiomycota 10,216 [95]
Cryptococcus neoformans Basidiomycota 6,594 [96]
Ustilago maydis Basidiomycota 6,522 Broad-FGI
Rhizopus oryzae Zygomycota 17,467 Broad-FGI
  1. aBroad-FGI, MIT/Harvard Broad Institute, funded through the Fungal Genome Initiative; JGI-DOE, Department of Energy Joint Genome Institute, Walnut Creek, California; Microbia, Cambridge, Massachusetts; Sanger Caenter, Wellcome Trust Sanger Center, Hinxton, Cambridge, United Kingdom.