Table 1 Fungal organisms used in this analysis are listed. Phylum, sub-phylum and classes are shown. *Gene sets were generated in house.
From: A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
Species | Phlum | Genes | Citation or sequencing group |
|---|---|---|---|
Candida albicans | Ascomycota | 6,662 | [86] |
Candida dubliniensis* | Ascomycota | 6,027 | Sanger Centre |
Candida tropicalis* | Ascomycota | 6,530 | Broad-FGI |
Candida parapsilosis* | Ascomycota | 4,891 | Sanger Centre |
Candida lusitaniae* | Ascomycota | 5,941 | Broad-FGI |
Candida guilliermondii* | Ascomycota | 5,235 | Broad-FGI |
Debaryomyces hansenii | Ascomycota | 6,896 | [49] |
Saccharomyces bayanus | Ascomycota | 4,492 | [87, 88] |
Saccharomyces castellii | Ascomycota | 4,677 | [87] |
Saccharomyces cerevisiae | Ascomycota | 5,873 | [89] |
Saccharomyces kudriavzevii | Ascomycota | 3,768 | [87] |
Saccharomyces mikatae | Ascomycota | 4,525 | [87, 88] |
Saccharomyces paradoxus | Ascomycota | 4,788 | [88] |
Candida glabrata | Ascomycota | 5,272 | [49] |
Kluyveromyces lactis | Ascomycota | 5,331 | [49] |
Saccharomyces kluyveri | Ascomycota | 2,968 | [87] |
Kluyveromyces waltii | Ascomycota | 5,214 | [90] |
Ashbya gossypii | Ascomycota | 4,718 | [91] |
Yarrowia lipolytica | Ascomycota | 6,666 | [49] |
Magnaporthe grisea | Ascomycota | 11,109 | [92] |
Neurospora crassa | Ascomycota | 10,620 | [93] |
Podospora anserina * | Ascomycota | 10,443 | Broad-FGI |
Chaetomium globosum | Ascomycota | 11,124 | Broad-FGI |
Trichoderma reesei * | Ascomycota | 13,248 | JGI-DOE |
Fusarium graminearum | Ascomycota | 11,640 | Broad-FGI |
Fusarium verticillioides * | Ascomycota | 12,751 | Broad-FGI |
Aspergillus oryzae | Ascomycota | 12,062 | NITE (Japan) |
Aspergillus nidulans | Ascomycota | 9,541 | Broad-FGI |
Aspergillus fumigatus | Ascomycota | 9,923 | TIGR and Sanger Centre |
Aspergillus terreus * | Ascomycota | 10,285 | Microbia |
Uncinocarpus reesii * | Ascomycota | 6,573 | Broad-FGI |
Histoplasma capsulatum * | Ascomycota | 6,605 | Broad-FGI |
Coccidioides immitis * | Ascomycota | 6,622 | Broad-FGI |
Sclerotinia sclerotiorum | Ascomycota | 14,522 | Broad-FGI |
Botrytis cinerea | Ascomycota | 16,448 | Broad-FGI |
Stagonospora nodorum | Ascomycota | 16,597 | Broad-FGI |
Schizosaccharomyces pombe | Ascomycota | 4,991 | [94] |
Coprinus cinereus* | Basidiomycota | 9,452 | Broad-FGI |
Phanerochaete chrysosporium* | Basidiomycota | 10,216 | [95] |
Cryptococcus neoformans | Basidiomycota | 6,594 | [96] |
Ustilago maydis | Basidiomycota | 6,522 | Broad-FGI |
Rhizopus oryzae | Zygomycota | 17,467 | Broad-FGI |