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Table 7 List of cloned and predicted genes utilized for analysis of synteny and phylogeny of the extended β subunit gene family in vertebrates.

From: Molecular cloning and analysis of zebrafish voltage-gated sodium channel beta subunit genes: implications for the evolution of electrical signaling in vertebrates

   Analysis of Synteny   Analysis of Phylogeny
Gene Species Accession No. (Gene) Physical Location Accession No. (Protein)
SCN1B Homo sapiens ENSG00000105711 chr. 19 (FWD, 40.21–40.22 Mb) ENSP00000262631
  Rattus norvegicus ENSRNOG00000021102 chr. 1 (REV, 86.16–86.17 Mb) n/a
  Danio rerio ENSDARG00000060222 chr. 16 (REV, 47.82–47.83 Mb) ABF47239
SCN2B Homo sapiens ENSG00000149575 chr. 11 (REV, 117.54–117.55 Mb) ENSP00000278947
  Rattus norvegicus ENSRNOG00000016221 chr. 8 (FWD, 48.07–48.08 Mb) n/a
  Danio rerio ENSDARG00000041176 chr. 15 (REV, 27.32 Mb) ABF47241.
  Xenopus tropicalis ENSXETESTG00000009930 *scaffold_39 (FWD, 0.58–0.59 Mb) ENSXETESTP00000016971
  Gallus gallus ENSGALG00000021272 chr. 24 (REV, 5.10–5.11 Mb) ENSGALP00000033652
SCN3B Homo sapiens ENSG00000166257 chr. 11 (REV, 123.01–123.03 Mb) ENSP00000299333
  Rattus norvegicus ENSRNOG00000006937 chr. 8 (FWD, 43.23–43.25 Mb) n/a
  Danio rerio ENSDARESTG00000011553 chr. 15 (REV, 28.62–28.64 Mb) ABF47244
  Xenopus tropicalis ENSXETESTG00000002589 *scaffold_298 (FWD, 0.94–0.96 Mb) ENSXETESTP00000004357
  Gallus gallus ENSGALESTG00000012587 chr. 24 (FWD, 2.82–2.83 Mb) ENSGALESTP00000019882
SCN4B.1 Homo sapiens ENSG00000177098 chr. 11 (REV, 117.51–117.53 Mb) ENSP00000322460
  Rattus norvegicus ENSRNOG00000026679 chr. 8 (FWD, 48.09–48.11 Mb) n/a
  Danio rerio ENSDARESTG00000010162 chr. 15 (REV, 27.26–27.29 Mb) ABF47245
  Xenopus tropicalis ENSXETESTG00000009931 *scaffold_39 (FWD, 0.61–0.63 Mb) ENSXETESTP00000016972
  Gallus gallus ENSGALG00000007409 chr. 24 (REV, 5.10 Mb) ENSGALP00000011971
SCN4B.2 Danio rerio ENSDARESTG00000000878 chr. 5 (FWD, 38.08–38.10 Mb) ABF47246
MPZ Homo sapiens ENSG00000158887 chr. 1 (REV, 159.54–159.55 Mb) ENSP00000289928
  Rattus norvegicus ENSRNOESTG00000011377 chr. 13 (FWD, 87.04–87.05 Mb) n/a
  Danio rerio ENSDARG00000038609 chr. 2 (REV, 46.60–46.62 Mb) ENSDARP00000056371
  Gallus gallus ENSGALESTG00000015635 *chr. Un (REV, 60.79–60.80 Mb) ENSGALP00000008810
MPZL1 isoA Homo sapiens ENSG00000197965 chr. 1 (FWD, 165.96–166.03 Mb) ENSP00000352513
  Rattus norvegicus ENSRNOG00000003248 chr. 13 (REV, 81.32–81.36 Mb) n/a
  Xenopus tropicalis ENSXETG00000023014 *scaffold_195 (REV, 1.78–1.79 Mb) ENSXETP00000049765
  Gallus gallus ENSGALG00000015438 chr. 1 (REV, 85.41–85.44 Mb) ENSGALP00000024855
EVA1 Homo sapiens ENSG00000149573 chr. 11 (REV, 117.63–117.64 Mb) ENSP00000278937
  Rattus norvegicus ENSRNOG00000016085 chr. 8 (FWD, 47.99–48.00 Mb) n/a
  Danio rerio ENSDARG00000027345 chr. 5 (FWD, 38.05–38.07 Mb) ENSDARP00000032601
  Xenopus tropicalis ENSXETESTG00000008504 *scaffold_39 (FWD, 0.51–0.54 Mb) ENSXETESTP00000014524
  Gallus gallus ENSGALG00000007412 chr. 24 (REV, 5.12–5.13 Mb) ENSGALP00000011976
"EVA1-like" Homo sapiens ENSG00000160588 chr. 11 (REV, 117.60–117.63 Mb) ENSP00000278949
  Rattus norvegicus ENSRNOG00000026753 chr. 8 (FWD, 48.00–48.01 Mb) n/a
  Gallus gallus ENSGALG00000021271 chr. 24 (REV, 5.11–5.12 Mb) ENSGALP00000033649
PSMC4 Homo sapiens ENSG00000013275 chr. 19 (FWD, 45.17–45.18 Mb) n/a
  Rattus norvegicus ENSRNOG00000018994 chr. 1 (REV, 83.15–83.16 Mb) n/a
  Danio rerio ENSDARG00000027099 chr. 16 (FWD, 47.99-5-48.00 Mb) n/a
  Xenopus tropicalis ENSXETG00000014266 *scaffold_1060 (REV, 0.17 Mb) n/a
FBL Homo sapiens ENSG00000105202 chr. 19 (REV, 45.02–45.03 Mb) n/a
  Rattus norvegicus ENSRNOG00000019229 chr. 1 (FWD, 83.27–83.28 Mb) n/a
  Danio rerio ENSDARG00000053912 chr. 16 (FWD, 47.49–47.50 Mb) n/a
  Xenopus tropicalis ENSXETG00000017830 *scaffold_1073 (REV, 0.14 Mb) n/a
APOA1 Homo sapiens ENSG00000118137 chr. 11 (REV, 116.21 Mb) n/a
  Danio rerio ENSDARG00000012076 chr. 5 (REV, 38.04 Mb) n/a
  Gallus gallus ENSGALG00000007114 chr. 24 (REV, 4.79–4.80 Mb) n/a
  1. All genes and proteins are identified by Ensembl accession numbers, except for cloned zebrafish beta subunit protein sequences (which begin with ABF and represent accession numbers assigned by GenBank). * = unmapped scaffolds in Ensembl database. FWD = forward and REV = reverse and refers to gene orientation. n/a = not applicable (e.g. proteins for this species were not included in phylogenetic analysis).