Table 3 List of genes containing dsRHbd in complete genomes.
From: Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes
Kingdom | Species | Accession No. | ORF | Direction | Domain |
|---|---|---|---|---|---|
Archaea | Euryarchaeota | Â | Â | Â | Â |
|  |    Methanococcus maripaludis | NC_005791 | 832383–832988 | complement | dsRHbd (4–46), RNH (65–201) |
Bacteria | Bacteroidetes | Â | Â | Â | Â |
|  |    Bacteroides fragilis NCTC 9343 | NC_003228 | 207338–207967 | complement | dsRHbd (6–48), RNH (79–197) |
|  |    Bacteroides fragilis YCH46 | NC_006347 | 253987–254616 | complement | dsRHbd (6–48), RNH (79–197) |
|  |    Bacteroides thetaiotaomicron | NC_004663 | 4371820–4372455 | complement | dsRHbd (6–48), RNH (81–199) |
|  |    Porphyromonas gingivalis | NC_002950 | 1292573–1293223 | direct | dsRHbd (5–47), RNH (85–199) |
| Â | Cyanobacteria | Â | Â | Â | Â |
|  |    Gloeobacter violaceus | NC_005125 | 3808044–3808685 | complement | RNH (1–138), dsRHbd (156–197) |
| Â | Firmicutes | Â | Â | Â | Â |
|  |    Bacillus clausii | NC_006582 | 1399495–1400094 | direct | dsRHbd (6–48), RNH (74–183) |
|  |    Bacillus halodurans | NC_002570 | 933504–934094 | direct | dsRHbd (6–48), RNH (69–192) |
|  |    Clostridium acetobutylicum | NC_003030 | 2659515–2660237 | complement | dsRHbd (6–48), RNH (103–238) |
|  |    Clostridium perfringens | NC_003366 | 1707913–1708542 | complement | dsRHbd (5–49), RNH (70–207) |
|  |    Clostridium tetani | NC_004557 | 2281472–2282092 | complement | dsRHbd (5–47), RNH (68–203) |
|  |    Desulfitobacterium hafniense | NC_007907 | 2075150–2075770 | complement | dsRHbd (8–50), RNH (71–203) |
|  |    Lactobacillus acidophilus | NC_006814 | 116459–117205 | direct | dsRHbd (3–45), RNH (91–245) |
|  |    Lactobacillus delbrueckii | NC_008054 | 146497–147264 | direct | dsRHbd (4–45), RNH (93–253) |
|  |  |  | 978609–979283 | complement | Resolvase (1–106), dsRHbd (127–168) |
|  |    Lactobacillus johnsonii | NC_005362 | 118550–119281 | direct | dsRHbd (3–45), RNH (86–240) |
|  |    Lactobacillus plantarum | NC_004567 | 2310574–2311470 | direct | dsRHbd (5–47), RNH (70–225) |
|  |    Lactobacillus salivarius | NC_007929 | 459722–460381 | direct | dsRHbd (4–46), RNH (59–216) |
|  |    Mesoplasma florum | NC_006055 | 559864–560484 | complement | dsRHbd (3–45), RNH (63–199) |
|  |    Mycoplasma capricolum | NC_007633 | 382602–383222 | direct | dsRHbd (5–47), RNH (63–198) |
|  |    Mycoplasma mycoides | NC_005364 | 375791–376408 | direct | dsRHbd (5–47), RNH (62–198) |
|  |    Mycoplasma penetrans | NC_004432 | 1267458–1268120 | complement | dsRHbd (5–47), RNH (73–216) |
| Â | Fusobacteria | Â | Â | Â | Â |
|  |    Fusobacterium nucleatum | NC_003454 | 1651474–1652124 | complement | dsRHbd (6–48), RNH (70–215) |
| Â | Deltaproteobacteria | Â | Â | Â | Â |
|  |    Bdellovibrio bacteriovorus | NC_005363 | 3036447–3037238 | complement | RNH (18–164), dsRHbd (207–248) |
|  |    Desulfotalea psychrophila | NC_006138 | 1023218–1024003 | direct | dsRHbd (28–70), RNH (105–247) |
|  |    Myxococcus xanthus | NC_008095 | 2628106–2628873 | complement | RNH (3–154), dsRHbd (199–240) |
| Â | Gammaproteobacteria | Â | Â | Â | Â |
|  |    Colwellia psychrerythraea | NC_003910 | 1743847–1744665 | complement | dsRHbd (5–47), RNH (98–247) |
|  |    Photobacterium profundum | NC_006370 | 2161121–2161870 | complement | dsRHbd (5–47), RNH (77–225) |
|  |    Saccharophagus degradans | NC_007912 | 82187–82945 | complement | dsRHbd (5–47), RNH (81–228) |
|  |    Shewanella denitrificans | NC_007954 | 880428–881219 | direct | dsRHbd (5–47), RNH (91–239) |
| Â | Spirochaetes | Â | Â | Â | Â |
|  |    Borrelia burgdorferi | NC_001318 | 897096–897740 | complement | dsRHbd (19–62), RNH (74–211) |
|  |    Borrelia garinii | NC_006156 | 899069–899668 | complement | dsRHbd (4–47), RNH (88–196) |
| Â | Thermotogae | Â | Â | Â | Â |
|  |    Thermotoga maritima | NC_000853 | 1322788–1323459 | complement | dsRHbd (7–49), RNH (63–197) |